K20242

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20242

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20242

Determination of introduced cDNA(s)

  • J033076E11 - Rice Full-length cDNAs - Original: J033076E11

    full reading [+] show sequence

    Nucleotide sequence: J033076E11 - full reading 
    ACACACACTA ACTAATCAAC AACGATAATA ATATCCCATT CCTTCCTTCC 
    AATTTGAGAT TAGATTAGCG GAGGAAGGAA TGGCCGTGAC GGCGGAGATG 
    GAGTCGTCGC CGGCGGCGAC GGGGAAGCTG CGGTACAACT CGCCGCTGGT 
    GCAGGTGTCC CTGATCGGGT TGGTGTGCTT CTGCTGCCCT GGCATGTTCA 
    ACGCCCTGAC CGGGCTCGGC GGCGGCGGGC AGCTGGACCA CTCCACCGCC 
    GACAACGCCA ACACCGCCCT CTACTCCTGC TTCGCCGTCT TCGGCGTCCT 
    CGGCGGCGCC GCCCACAACC TCCTCGGCCC GCGCGTCACC CTCCTCGCCG 
    GCGCCCTCAC CTACCCGCTC TACGCCGCCT CCTTCCTCTA CTACAACCAC 
    CACCCCTCCC GCCAGGCCTT CCCCGTCACC GCCGGCGCCC TCCTCGGCGT 
    CGGGGCCGGA CTCCTCTGGG CCGCGCAGGG CGCCATCATG ACGTCATACC 
    CACCCCCGTC CCGCCGCGGC TCCTACATCT CCCTCTTCTG GTGCCTCTTC 
    AACCTCGGCG GCGTCCTCGG TGGCCTCCTC CCCTTCTCCC TCAACTACCA 
    CCGCGCCGCC GACGCCGCCA GCGTCAACGA CGCCACCTAC ATCGCTTTCA 
    TGGCGTTCAT GCTCCTCGGC GCGGGCCTCG CCCTCCTCCT CCTGCCGGCC 
    TCCAGGATCG TCCGCGACGA CGGCAGCCGC GCCACCAGGA TGAGCTACTC 
    CTCCGTGTCC ACCGAGGGGT GGGAGATCCT CAAGCTGTTC GCCAACTGGA 
    GGATGCTGCT CGTCCTCCCC GCCGCATGGG CCAGCAACTT CTTCTACACC 
    TACCAGTTCA ACAACGTCAA TGGCCGCCTC TTCACGCTCC GCACCAAGGG 
    CCTCAACAAC GTCTTCTACT GGGGCGCCCA GATGCTCGGC TCCGCGGCCA 
    TCGGCTACTT CCTCGACTTC GGATTCGGAT CCTCCAGCAG GAGGAGGAGG 
    GGCCTGTGCG GGGTCGCCGC CGTCGCCGTG CTCGGCACCG CCATCTGGGC 
    CGGCGGCCTC GCCAACCAGC TCCGCTACGC CGACGGCAAT TGGGGGGAGA 
    GGCTCATCGA TTTCAAGGAT GGGCGGCGGT ACGCGGGGCC CTTCCTGCTC 
    TACTTCAGCT ACGGATTGCT GGACGCCATG TTCCAGAGCC TCATCTACTG 
    GATCATCGGC GCCCTCGCCA ACGACACCCA AATCCTCAGC AGATATGTTG 
    GATTCTATAA GGGAGTGCAA AGTGCTGGAG CAGCTGTGGC ATGGCAAATT 
    GATACCCACA AGACAAGCCT AATTTCGCAA TTGATTGTGA ATTGGGCGCT 
    TACTACCGTG AGCTACCCCT TGCTTGCACT CTTGGTGTTC TTAGCTGTGA 
    AGGAGGAGGA CAGTTCTGTT TCTTCTGTTG AGGATGGCAA AGAGAAAGAT 
    AGCAAACTGT CTGCACCAAC CAGCTTCCAC TGAGGAGATC TGGAGTTTTT 
    TCAGTGTGTT CCTTCCTTTG AAAGTACATT TTAGAAATCA AAGGAGTAGA 
    GTGATTTAGG GGCCATGGTA TAGAAAGTAA GTTTCCTCGA TGCAATTTTC 
    TTGGTGTTTA CGTATGTGTA GCTTATTGTT TCAACTGCTA TGAAAGGTAG 
    CTATGGTTTC AGGCTTCC

    Gene models with high sequence identity

    1. AT1G18010.1 [+] show detail - Major facilitator superfamily protein
      E-value: 1e-141; Score: 500.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 4.8e-23
    HMMPanther ET TRANSLATION PRODUCT-RELATED 5.3e-08
    FPrintScan PRICHEXTENSN 3.3e-09
    FPrintScan PRICHEXTENSN 3.3e-09
    FPrintScan PRICHEXTENSN 3.3e-09
    FPrintScan PRICHEXTENSN 3.3e-09
    HMMPfam UNC-93 1.4e-11

    See the detailed result >

    AT1G18010.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G18000.1); Has 758 Blast hits to 750 proteins in 174 species: Archae - 0; Bacteria - 91; Metazoa - 141; Fungi - 422; Plants - 82; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR