K20529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20529

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20529

Determination of introduced cDNA(s)

  • J023031H12 - Rice Full-length cDNAs - Original: J023031H12

    full reading [+] show sequence

    Nucleotide sequence: J023031H12 - full reading 
    GAGAAGAAAA GCCTTGTGAG TTGGTAATTG ATAGTAGCAA GACAATGTGT 
    GGGGGAGCGA TCATCGCCGA CTTCGTCCCG CCCGCCGGCG CCCGCCGCGC 
    CGCTGCCTCC GACATCTCCG ACAACGCCGT CCTCTCCGCT GCCGGTGCCG 
    GTGACGAGTC GTTCGCGGCG GCCAAGGCGC CGGCGCCGGG GAGGAAGACG 
    GCGTACCGCG GCATCCGGCG CCGGCCGTGG GGACGCTGGG CGGCGGAGAT 
    CCGCGACCCG AGGAAGGGCG CCCGCGTCTG GCTCGGCACC TACGCCACCG 
    CCGAGGAGGC CGCCCGCGCC TACGACGTCG CGGCGCGCGA CATCCGCGGC 
    GCCAAGGCCA AGCTCAACTT CCCCCCGACC ATCGGCGCCG CCGCCGCGCC 
    ACCGCCGCCC AAGAAGCGAC GCAAAGCCGC CGCCGCGGCG AACCACCACC 
    ACCACCACCA CCAGCAGGAG AGCTCAGGCT CCTCGTCGGC GTCGTCGCTG 
    CCTCCCACCC CGCCGCCGGC CGCCGAGCAC CAGCTCCGCG AGTGCATGTC 
    CGGGCTGGAG GCGTTCTTGG GCCTCGAGGA GGAGGAGGAC GACGGCGGCG 
    CCGGTGAGCC ATGGGACGCC GTCGACATGA TGCTCGAGTA GGCTCGCCGG 
    GAATGGCAGC GTTGCCATGC TCATGCATCC AAGCTTATTC ATGCATGCAG 
    CAGCAAGATA TACAACTTTA GTACTACTAC TATGTTAATT ACTACTTACT 
    GCGTAGGTAA ATGAAATAAA ATGGGGTTGG TTAATTAGGG TGTTCTTCTG 
    GGAATCCTTG GCTTTGCTAA TTGCTAGTAC TACTATGTAC TTTGGCGTTA 
    AGCATTGCAT TGCCAGGTGA TGCATGTCAT GTAATCGTGG TAATTATATG 
    GCCGTCCTCC TAGAGCTAGC TAGCAGATTA GATTTACTAT ATAAAGTGGT 
    AGTAGAAATA TATGTCCTCC TAGAGCTAAC TAGTGTCTTG TAATGATTTC 
    AGACTTCTTG GGCAACATGA GCAATGCATT TCGACTTCCA CTTTACATCT

    Gene models with high sequence identity

    1. AT3G16770.1 [+] show detail - ethylene-responsive element binding protein
      E-value: 5e-15; Score: 79.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 4.1e-24
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.5e-16
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-11
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-11
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.8e-34
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.895
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.8e-23

    See the detailed result >

    AT3G16770.1

    Model type
    Protein coding
    Short Description
    ethylene-responsive element binding protein
    Curator Summary
    Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.
    Computational Description
    ethylene-responsive element binding protein (EBP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1); Has 5957 Blast hits to 5752 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5929; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR