K20543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20543

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20543

Determination of introduced cDNA(s)

J033148M04 - Rice Full-length cDNAs - Original: J033148M04

full reading [+] show sequence

GATCACACTC GCAAAAATGG TTGTCTACAG CATCCTCATC CTCTTTCTAC 
TACTATTGAT CTTCTCCATC TCCAACTCCC AATCGGCGGC GCAGCCCAGC 
GCCGACGAGC AAACACTACT CCTAGCAATC AAGCAAGATT GGGACAACCC 
AGCTCCACTC AGTTCATGGA GCAGCACCGG CAACTGGACT GGTGTTATCT 
ACAACAATAT CACAGGTCAG GTCACTGGCC TCTCCTTGCC AAGTTTCCAT 
ATAGCCAGAC CAAACCCACC CTCCGTTTGT AGACTCAAGA ACCTAACCTA 
CATAGACCTC TCTTTCAACA ATCTCACCGG TGATTTCCCC ACGGTGCTCT 
ACGGTTGCTC AGCTTTGGAG TTCCTTGACC TATCCAACAA TCAATTATCC 
GGCAAACTTC CGGACCGCAT TGACAGGCTA TCGTTGGGGA TGCAACACCT 
CAACCTGTCC AGCAATGCTT TCACCGGCGA TGTGCCGTTG GCTATTGGAA 
GGTTCTCGAA GCTCAAGTCA TTGGTACTTG ACACTAACAG CTTCAATGGG 
AACTACCCGG GTGCCGCCAT TGGAGGCCTT TTGGAGCTTG AGACGCTGAC 
GCTGGCGAAA AACCCGTTTG AGCCGGGTCC AGTCCCAAAA GAGTTTGGCA 
ATCTCACAAA GCTGAAGTTG TTGTGGTTAT CATGTATGAA CATGACTGGG 
ACCATCCCTG ATGATCTATC GTCACTGACA GAGCTCACAC TGCTGGACTT 
GTCACAAAAT AAGATGCAGG GACAAATTCC CGAGAGCTTG ATCTGTCCAT 
GAACAAGTTC TCTGGATCAA TACCAGAGGA CATTGCAAAC CTGAAGAAGT 
TGAGATTACT ATTTTTGTAC TACAACAATC TCACTGGACC CATCCCGGCT 
GGTGTTGGTA TGATGCCGAA CCTCACTGAC ATCCGTCTCT TCAATAACAA 
GCTCTCTGGG CCCCTACCCG CGGAGCTTGG AAAGCATTCG GAATTGGGGA 
ATTTTGAGGT GTCCAACAAC AACCTCTCTG GTGAGCTGCC GGATACACTT 
TGCTTCAATA AGAAGCTCTT TGACATTGTG GTGTTCAACA ATAGCTTCTC 
CGGCGTGTTC CCGACGAACC TTGGGGATTG CAAAACCATC AACAACATCA 
TGGCATACAA CAACCACTTT GTTGGGGACT TTCCCAAGAA GATATGGTCA 
TTCGAGTTGC TCACCAATGT CATGATTTAC AACAACTTCA CCGGCACTCT 
ACCTAGTGAG ATATCATTTA ACATCTTAAG GATTGAGATG GGGAACAATC 
GCTTCTCCGG TGCCCTCCCG TCGGCCGCCG TCGGTCTGAA GAGTTTCACG 
GCGGAGAACA ACCAGTTCTC CGGTGAACTG CCAACTGACA TGTCTAGGCT 
CGCCAACCTC ACCATGTTGA ACCTCGCCGG CAACCAGTTG CTCACCACTG 
TCAAGATTTA TATTAACAAC TTCGCCAGCA CTCTACCAAG TAATAAGATT 
GTTAGTAAGT CAAATGT

Gene models with high sequence identity

AT1G28440.1 [+] show detail - HAESA-like 1
E-value: 7e-71; Score: 129.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Leucine-rich repeat	130
HMMPanther	PTHR23258	4.69998262513195e-45
Gene3D	G3DSA:3.80.10.10	1.90000694315261e-35
superfamily	SSF52058	2.39999798157265e-37
HMMPanther	PTHR23258:SF462	4.69998262513195e-45
superfamily	L domain-like	2e-43
HMMPfam	Leucine-rich repeat	0.026
HMMPfam	Leucine-rich repeat	0.0067
HMMPfam	Leucine-rich repeat	0.97
Gene3D	no description	4.1e-42
FPrintScan	Toll-like receptor, leucine rich repeat-containing	1.7e-06
FPrintScan	Toll-like receptor, leucine rich repeat-containing	1.7e-06
HMMPanther	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN	7.9e-41
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	7.9e-41

See the detailed result >

AT1G28440.1

Model type: Protein coding
Short Description: HAESA-like 1
Computational Description: HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink).
Link: InterPro Scan - TAIR