K20721

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20721

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20721

Determination of introduced cDNA(s)

  • J013155B14 - Rice Full-length cDNAs - Original: J013155B14

    full reading [+] show sequence

    Nucleotide sequence: J013155B14 - full reading 
    GGGGGTCGCG TCTTCTTTGT GCAGGTGACG AGTCGTTCGC GGCGGCCAAG 
    GCGCCGGCGC CGGGGAGGAA GACGGCGTAC CGCGGCATCC GGCGCCGGCC 
    GTGGGGACGC TGGGCGGCGG AGATCCGCGA CCCGAGGAAG GGCGCCCGCG 
    TCTGGCTCGG CACCTACGCC ACCGCCGAGG AGGCCGCCCG CGCCTACGAC 
    GTCGCGGCGC GCGACATCCG CGGCGCCAAG GCCAAGCTCA ACTTCCCCCC 
    GACCATCGGC GCCGCCGCCG CGCCACCGCC GCCCAAGAAG CGACGCAAAG 
    CCGCCGCCGC GGCGAACCAC CACCACCACC ACCACCAGCA GGAGAGCTCA 
    GGCTCCTCGT CGGCGTCGTC GCTGCCTCCC ACCCCGCCGC CGGCCGCCGA 
    GCACCAGCTC CGCGAGTGCA TGTCCGGGCT AGGCGTTCTT GGGCCTCGAG 
    GAGGAGGAGG ACGACGGCGG CGCCGGTGAG CCATGGGACG CCGTCGACAT 
    GATGCTCGAG TAGGCTCGCC GGGAATGGCA GCGTTGCCAT GCTCATGCAT 
    CCAAGCTTAT TCATGCATGC AGCAGCAAGA TATACAACTT TAGTACTACT 
    ACTATGTTAA TTACTACTTA CTGCGTAGGT AAATGAAATA AAATGGGGTT 
    GGTTAATTAG GGTGTTCTTC TGGGAATCCT TGGCTTTGCT AATTGCTAGT 
    ACTACTATGT ACTTTGGCGT TAAGCATTGC ATTGCCAGGT GATGCATGTC 
    ATGTAATCGT GGTAATTATA TGGCCGTCCT CCTAGAGCTA GCTAGCAGAT 
    TAGATTTACT ATATAAAGTG GTAGTAGAAA TATATGTCCT CCTAGAGCTA 
    ACTAGTGTCT TGTAATGATT TCAGACTTCT TGGGCAACAT GAGCAATGCA 
    TTTCGACTTC C

    Gene models with high sequence identity

    1. AT3G16770.1 [+] show detail - ethylene-responsive element binding protein
      E-value: 5e-15; Score: 78.60

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.8e-23
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.2e-11
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.2e-11
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.8e-34
    superfamily DNA-binding, integrase-type 4.1e-24
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.895
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 8.3e-17

    See the detailed result >

    AT3G16770.1

    Model type
    Protein coding
    Short Description
    ethylene-responsive element binding protein
    Curator Summary
    Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.
    Computational Description
    ethylene-responsive element binding protein (EBP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1); Has 5957 Blast hits to 5752 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5929; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR