K20805

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20805

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20805

Determination of introduced cDNA(s)

  • J013094M20 - Rice Full-length cDNAs - Original: J013094M20

    full reading [+] show sequence

    Nucleotide sequence: J013094M20 - full reading 
    GCTTCTCATT TACTGCAGAA GGTGAAGGTG AAGGAGGAGG CGGCCATGGC 
    GAGGGAGCAG GCGCTGCTGT TGACGGAGAT CGTGAACCGC GGCGTGGAGC 
    CGTCGGGGCC GGACGCCGGG TCGCCGACGT TCTCGGTGCG GGTGCGGCGG 
    CGGCTGCCGG ACTTCCTCCA GTCGGTGAAC CTCAAGTACG TGCGGCTCGG 
    GTACCACTAC CTCATCAGCC ACGGCGTGTA CCTGGCCACC ATCCCGGTCA 
    TCGTGCTCGT CTGCGGCGCC GAGGTCGGCA GCCTCAGCCG AGACGAGCTG 
    TGGCGCAAGG TCTGGGGCGA GGCCACCTAC GACCTCGCCA CCGTCCTCGC 
    CTTCCTCGCC GTCCTCGCCT TCACCATCTC CGTCTACATC ATGTCCAGGC 
    CTAGGCCCGT CTACCTCATC GACTTCGCCT GCTACAAACC AGCCGACGAA 
    CTCAAGGTGT CGAAGGCGGA GTTCATCGAT CTGGCGAGGA AGTCGGGCAA 
    GTTCGACGAG GATAGCCTGG CGTTCCAGTC GCGGCTGCTG GCCAAGTCTG 
    GCATCGGCGA CGAGTCCTAC ATGCCGCGCT GCGTGTTCGA GCCGGGCACC 
    AACTGCGCCA CCATGAAGGA AGGCCGCGCC GAGGCGTCCG CCGCCATGTT 
    CGCCGCGCTG GACGAGCTGT TCGACAAGTG CCGCGTCCGC CCCAAGGACG 
    TCGGCGTGCT CGTCGTCAAC TGCAGCCTCT TCAACCCGAC GCCGTCGCTG 
    TCCGCCATGA TCGTCAACCA CTACAAGATG CGCGGGAACA TCCTCAGCTA 
    CAACCTCGGC GGCATGGGGT GCAGCGCCGG CGTCATCGCG GTGGACCTCG 
    CCCGCGACAT GCTCCAGGCC AGCGGCGCGG GGCTCGCCGT CGTCGTCAGC 
    ACGGAGGCCG TCTCCTTCAC CTGGTACGCC GGGAAGCGCC GCTCCATGCT 
    CATCCCCAAC GCCTTCTTCC GCGCCGGCTG CGCCGCCGTG CTGCTCTCCA 
    ACCGCCGCAG GGACTTCCAC CGCGCCAAGT ACCAGCTCGA GCACATCGTG 
    CGCACCCACA AGGGCGCCGA CGACCGCAGC TTCCGGTCGG TGTACCAGGA 
    GGAGGACGAG CAGCGGATCA AGGGCCTGTC CATCAGCCGC GACCTCGTGG 
    AGGTCGGCGG CCACGCGCTC AAGACCAACA TCACCACCCT GGGCCCGCTC 
    GTGCTTCCGT TCTCGGAGCA GATCCTCTTC TTCGCCGGCG TGCTCTTCCG 
    CCACCTGTTC CCGTCCAAGA CCTCCGCCCC GCCGCCGCCG TCCGCCGACG 
    GCGACGCCTC CGCCGCCGCT CCCTACATCC CGGACTTCAA GCGCGCGTTC 
    GAGCACTTCT GCATGCACGC GGCGAGCCGC GACGTGCTGG AGCACCTGCA 
    GGGCAACCTG GGCCTCCGCG ACGGCGACCT GGAGGCGTCG CGCGCCGCGC 
    TCCACCGCTT CGGCAACACG TCGAGCAGCA GCATCTGGTA CGAGCTGGCG 
    TACCTGGAGG CCAAGGGCCG CGTCCGCCGC GGCGACCGCG TGTGGCAGCT 
    CGCCTTCGGC TCCGGGTTCA AGTGCAACAG CGCCGTGTGG CGCGCCGTCC 
    GCCGCGTGCG CCGCCCGGCG CGCAGCCCGT GGCTGGACTG CGTCGAGCAG 
    TACCCGGCTC GCATGAACGC TTAAGCTGCA GTGGTAAGTA TGCAGAGGCT 
    AATGAACGGA AAATTACTGC AACGTCAAAA GACGGGATCG GCATGCGATG 
    CCGGTTAAGG TTCAAGCTTG ATTAATTTGT GTTGGTGTAT TAGCAAGTCG 
    GTTTATGAGC CATAGACTAC CATAAAAGTT GTGCGAGACA TGTGTACTGA 
    ACCAGTGTAC GCGAGTTCGG TGATATGTGA ACTTATCTAC GTTTGATTCT 
    ATT

    Gene models with high sequence identity

    1. AT2G26250.1 [+] show detail - 3-ketoacyl-CoA synthase 10
      E-value: 0; Score: 715.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thiolase-like, subgroup 1.3e-48
    Gene3D Thiolase-like, subgroup 2.3e-22
    HMMPIR Very-long-chain 3-ketoacyl-CoA synthase 7.8e-265
    superfamily Thiolase-like 6.2e-86
    HMMPfam FAE1/Type III polyketide synthase-like protein 2.1e-131
    HMMPfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal 4.1e-12

    See the detailed result >

    AT2G26250.1

    Model type
    Protein coding
    Short Description
    3-ketoacyl-CoA synthase 10
    Curator Summary
    epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle.
    Computational Description
    3-ketoacyl-CoA synthase 10 (KCS10); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 4 (TAIR:AT1G19440.1); Has 1723 Blast hits to 1687 proteins in 351 species: Archae - 0; Bacteria - 632; Metazoa - 0; Fungi - 0; Plants - 985; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR