K20933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20933

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K20933

Determination of introduced cDNA(s)

  • J033043O05 - Rice Full-length cDNAs - Original: J033043O05

    full reading [+] show sequence

    Nucleotide sequence: J033043O05 - full reading 
    GGGAGATGTA CTTTTGCTTC TACATGATTC AAACATCAAG TCTTGAAAAG 
    CTCGAATTTT TTTTTTTGTA AATGAAAAAA ATATGTATAG AACCAGCTGA 
    GAACCTTGTT TTAACCAAAC ACTCAGGCTC CAGGTTCCGG AACCCTGCAG 
    TGTAAACCTA TTTCTGGCTG ATCTACCTTT GAAATAATTG TTTTCCAACT 
    AGTAGTTGGT ACTCGCCAAT ATGTGAAATC TCCAGACTTA TTTCAGTTTT 
    TTTTTTCTTT TTGGCAGGAT CTTGGCTTTA GGGAGTACAT TGAAGAGGTT 
    CAAGCGGCCT ACGAACACCA TAAGCATGAT ACCCTGGATT CTCCAAAAGC 
    AAGCAAATTC ACTGGTGTGG AGATGACAGA GGAACAAGCT GTAGCTGAGC 
    AACAGAGGAT GTTTGCTGAG GCCCGAGCAA GGATGAACAA TGGTGCCGCC 
    AAACCGAAGG AGCCAGAACC TGAAGCGCAA CAACAAACAC AACAGCCACC 
    ACAGCCTCAG CTGCACCCTC AACCACAGCA ACCCCTGCAG CCTCAACTTC 
    AGCTCCATCC TCAACCACAA CAACAGCCCT CACAGCTACA TCCTCAACAG 
    CTGCTGCATC CTCAATCGCA GCAAACTCCG CAGCCTCAAC CTCAGGTCCA 
    CCCTCAACCA CAGCAGCCTC CACAGCTGCA ACCGCAACCT CAGCTTCTCC 
    AGCAACCGCA GCTGCCCCAA CAGCTGCAGC CGCAATCTCA GCTCCCCCCA 
    CAACCGCAGC AGCCCCCACA GCTGCAGCTG CAATCTCAGC TCCACCCACA 
    ACCGCAGCAG CCCCCACAGC TGCAGCCGCA ACCTCAGCTC CATCAGCAAC 
    CGCAGCCGCA GGCAGAGCTG CAATCACAGT CACAACCACA AACAGAACAT 
    GGCTTGGACA GTTCATGATT CAGATTCCAT GTTGTGTAGC CTCAGTATAA 
    GGAAAAGTTG GTGTACTTCC GCTGGCATTT ACTAGGACTC TGTGTGCCCC 
    TTGATAGTTT TAGGTTTCCA TGCTTCATGT ACAATGTAAA TCCAGTGTGA 
    TTTCAGTTAC CATGTTGCTA ATAATCTGAA GCTCTCTCTA GTCACTGATG 
    TTATTACTTT TCCAAACACC CTTTCTCTGA CTCTATGACT GTAGTAGTAT 
    CATGGCATGT ATGATGCCTT GTCAAAAGGG ACTCCATTAG CAGTGTAACT 
    TGACTTTTGC CGATGGC

    Gene models with high sequence identity

    1. AT5G23090.4 [+] show detail - nuclear factor Y, subunit B13
      E-value: 5e-18; Score: 89.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEI 6.2e-32
    HMMPanther CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6.2e-32

    See the detailed result >

    AT5G23090.4

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit B13
    Computational Description
    "nuclear factor Y, subunit B13" (NF-YB13); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.2); Has 1502 Blast hits to 1502 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 387; Plants - 520; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR