K21243

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21243

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21243

Determination of introduced cDNA(s)

  • J033109G07 - Rice Full-length cDNAs - Original: J033109G07

    full reading [+] show sequence

    Nucleotide sequence: J033109G07 - full reading 
    GAGGGTTCCG ACGAATCCCG AGCTCGGAGG CCGATGGCGT CGTCGTCGTC 
    GGCGGCGTCG GGGAAGTCGC GGCCGGAGTG CATCAACTCG TCGAACCCGT 
    TCCACGAGTG CTCCGACTAC TGCCTCCGCA AGATCGCCGA GGCCAAGGAG 
    CGCATCGAGG ACGAGCAGCG GCCGCCGGTG GACCGCACCG TCCACCCCGA 
    CTGCATCAAC GCCTCCAACC CCTACCACGT CTGCTCCGAG TACTGCTTCA 
    AGAGGATCGC CGACGCCAAA TCAGGGTTGG AGCGTGCGGA GCAAGAACCG 
    CCTTCTGCAG ACGCTGGCAA ATCCGACGCT GCCCAAGCTG AGGGTGGTGG 
    TGGTGATGAT GATGCGGAGC AGGAGGACGC CGGCTCAGAC GACGGTTACC 
    CGCAGATGAC AGAGAAGCAG AAGAAGCTAT TTGAGTTGCG GCTGAAGATG 
    AATGAAGCTA GGAAGGCAAA TCAGCAAGCG ATGGTGGCAG AGAAGAAGAG 
    GATGGAGCCT CGCGCTGAGA GTAGAGGTGT TTCTAAACAA AAGTGGCTGG 
    AAGACAGAAA AAAGAAGATC GGAAAGCTTC TTGACTCAAA TGGCCTGGAC 
    ATGACAAAGT CTTACATGCT CGATACACAG GAGTCGGCCG AAGCAAAATA 
    CAAGAAGTGG GAAAAGGAAC CTGCACCATA TGGTTGGGAT GTTTTCAACC 
    AGAAGACCTT ATATGATGCA TACAAAAAGA GGACCAAGAA CATTGAGGTT 
    GACATGGAGG CATACAACAA AGCAAAGGAA GCCGATCCTG AATTTTATCG 
    GGACGCTTCA AGTCTCCAAT ATGGGAAGGT GTCTAAGGTC CCGGAAGAAA 
    ACATAGACAG GATGGTTAAT GAGCTTAAGG AACGGGATGA GAAACGGAAA 
    GCATTCAGCA GGAGGCGCAA GTTCCATGAA GACAAGGACA TTGACTCGAT 
    CAATGACCGG AACGAACACT TCAACAAGAA GGTTGAGAGG GCATTTGGCA 
    AGTATACTCT TGAGATCAAG AACAATCTTG AAAGGGGGAC TGCCTTGCCA 
    GATTAGAAAC TCTGCACACT CTGCTGGTAG AGAGTGGACA TGTTGTCTGT 
    TTCCCCAGCT GTCTTTTGCT TGTAAGTTGT AACCTATCAA CAATTTGCTT 
    GGAAACTGTA ACTGTAAGAA AGCCAACTCG GATGTAATGT CGTGAGAATA 
    TAGCATATTC GAGAAGTTGT GTATCCAAAA TGAGCGGAAT CATTAACTAT 
    AGTGATTTTG CAATGTATCC AAATGAGCAT AATCATTAAC TGTAGTGGTG 
    TGCTGGTGCC CC

    Gene models with high sequence identity

    1. AT2G16860.1 [+] show detail - GCIP-interacting family protein
      E-value: 2e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther mRNA splicing factor SYF2 1.8e-43
    Coil coiled-coil 0
    HMMPfam mRNA splicing factor SYF2 3.4e-43

    See the detailed result >

    AT2G16860.1

    Model type
    Protein coding
    Short Description
    GCIP-interacting family protein
    Computational Description
    GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR