K21306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21306

Determination of introduced cDNA(s)

  • J033046G09 - Rice Full-length cDNAs - Original: J033046G09

    full reading [+] show sequence

    Nucleotide sequence: J033046G09 - full reading 
    GGTGCTGGTG GCCTAGAATC TCTCTGACTC TCCTCTCTCT CTTCGCCTCC 
    TTGTCGGCGG CCAGCCGCCG CCGCCGACCT CGCCGGTCGC CGCCACCGGC 
    GCCGCCGGCG GAGACGCCGA GAAATGGGAC GGAGCCTCTC CGTGGCAAGG 
    TGCCCCCGCG AGCGTCGCCA AAGCGAGACG AATTGTTTGA TCCTCGTTTC 
    GCTTGGAATG GACTAGGGTT CCGGTAGAAA TTGGCGCGCG CTTGAGGAGA 
    CAAAGAGTTA CGACGAAATT AGATTATTTT GGGGGGTGAT ATGTTCCAAA 
    TACCGAAGAC TGATTCTGAT TGCCGCTGCT GTTTGTTGGA GGACCAGAAG 
    ACATCTCACA AATATTTTTG GGGTTGGCAT ATAATACATT ATTATGCAGT 
    CTCGTGAGGT CTTAATCTCC ATTTCACAAG AAGAATCCTG TAAATGATGC 
    ACAGCTGTTA TCTCGTCTCA TAAGTGTGTC TTGGTTCAGT AAAAAACCAA 
    GTGTGGCTGG GGAGATTTCA GTTGTTTGAG GATGACCTTA CTCATGATAT 
    ATTCCAGGTA CAAGGTTGAC AAATTCTTAC TGGGAACAAC ACAATTAGAC 
    AGCAGTTTAT ACCGGCAAGC TTGTTCTAAA TAATCTTTGT ACCGGCGAGA 
    AATTTACTTA TCAGATTAGA CTCCAGGCAA CTACTGAAGG GAAGCCCCAG 
    GATTACATCA GAGCTACTTT CGTGTCAAGA ATGAGGTGCA CGGTGCTCTA 
    TTGTATCTTA CAGTTGGCCT GCCTCTTCTG AAGCTTGGTT CAGATCAGCA 
    TATCTAAATG CAATAACTCC ACTACCACTA TGAAAATTCT TTCTTCTGTG 
    ACCAAGCAGC CAACTCTTGT TCCTTGGGAT CTTCGCTATC AAGAAGAGTG 
    CCAAAGCAAA GGAAGCAACA CTTGCAGTGA TGGCAACGCC AATGAATATT 
    GATCGTCCAC TGCTTTTTAT ACTTTGCACC TCTTTGGCAG CAAGGCGAAG 
    CCGCCTGCTC GATCATCTAG CTCCCAGTCA TTGGGTGATC GTACAGAGAA 
    GCCCTTCATA CACTTGCAGA TAGGAAGCTT GCTCTCTTCG CAGACTGTGA 
    AAGCTCCACA AATGCCATAC ACATCACACT GCTTTGGGTT GGTGTAGGTT 
    GGTACCCAAT CTTGCACATG CTCCACCCAC AAAAATATCT TGGTCTGACC 
    AGAGATGTCC AGCATAAAAC GCATGATCGT TGCGTTATCT AGTAAGGTAT 
    ATGTGAAGTA CACTTCTTCA TCATTGTTGA CAAAAGTAAA ATCAATTAAG 
    CGTTGACCTG TCATCTCTGG TATGGAACCA AAGTAATGTC CGTTCCATTC 
    TCCACTAGAC CAATATGGTA TAGAGGAGTT GAGAGCTGCA AGGATGAACC 
    TGGTAGAACC ATTGTTGTCA GTTAACTCGT AACTGTACAT GCCAGAAGCT 
    GGGTCTACAG AGTTTTTCCT GGAAACAAGA CGGCGGTTTA AGCCAGTGAC 
    CTTGTTCCGG CCTAGCTTCG CACCGGCGAG ATGGGTATTT GTTGGGTAGT 
    CAAAGCTTTG CCACAAGACA ACCGAAGAAT TTGAGGTGTT CTGCAGGACA 
    AGGTTGCCAT TATCCAATAG CTTGACCATT GTTGTGTTTG CTGTGATGTC 
    AGCTTGGGTT GACCAGAAGA TGGACTTTGT GGCCTGATCT AAGATGACAA 
    GGTTTCCGTC ACCGGAGATT GTGGCCTCCG GCGAAGTGGG GCCAGTGACA 
    GGCTCATCTC CATTGGCAAC CCATGCTGGA GTGAGCTTTG GCACCTGGTT 
    GAACCATATC CCCAGGTACC AGTTTGAAGC ATTGTGGGAG GACTTACTGC 
    TGGTTGGGAA GAAGCCAAGC GCAAACTTGC CGTTGCTGGA GACAAGTATG 
    TCATTGCCGG CGAGTGTCTC CCCAGCTGAG ATGGTGTCTG TCACCTTGCA 
    GGATGCAGGA ATGTGCAGTG TGAAGAGGAG GAACAGGACA GTGATGGGAA 
    GAGCCATGGT GAACAAATCA AGAACTAGCT AGCACAGCTG CAAAGGTACT 
    TGGGTGAGGT AGATGACAGA GGATGCCTTG GCTGTGTACA TCCAGTTTGG 
    ATGTAGAGGC CGGGTTTAAT CAATTTTATC TAAAAAAAAA GGATGACAGA 
    GGATGCCAAC TGCGGCTTGC GCGTGTGGAT ACGAGAGAAC ACACTGCAAG 
    AGGGAAAGTG AGTAAGCTTG CATGGTCGTT GGGACTTGGC AGATGGTAAC 
    ATATTTGAAG GCAGAAAGAA GGATGGAGTC ATTGGCCTGA CCTAGCATAT 
    ATGGCAGTAA AAAAATTACA TCATGATACA GACATATAAC CGACTCTTAG 
    GGCTTTGTGA CCAATTAGTC GGCTGGCGAA TTAAAGAATC CGAAAGTACG 
    GCTGATTTCT GTCAAATGGT CAATCGACCG GGTTGTAATT TGGACTCAGT 
    TGTTGGTAAA TGATACTTCC TCCGTTTCAT ATTATAAGAC TTTCTAGCAT 
    TGTCCACATT CATATAGATG TTAATGAATC TAGATATATA TGTATGTGTA 
    TAGATTCATT CATAAATGAA ACGGAGGGAG TACTTCAATA GTGGCATAAA 
    TGACTTTCTG AAAACCAGAA ATTTGTAGCG CT

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 3e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Curculin-like (mannose-binding) lectin 18.336
    HMMPfam S-locus glycoprotein 1.9e-31
    HMMPfam Curculin-like (mannose-binding) lectin 6.8e-30
    superfamily Curculin-like (mannose-binding) lectin 8.5e-32
    HMMPanther gb def: OSJNBa0089E12.21 protein 4.4e-09
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.4e-09
    HMMSmart Curculin-like (mannose-binding) lectin 7e-28

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR