K21338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21338

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21338

Determination of introduced cDNA(s)

  • J013119D08 - Rice Full-length cDNAs - Original: J013119D08

    full reading [+] show sequence

    Nucleotide sequence: J013119D08 - full reading 
    GGGTTGGGGA CGAAGTAGCC GGCGGCACGG CGATGTCAGC GGTTGGGATG 
    AAGACGGCGT GCGTGACCGG CGGGAACGGG TATATCGCTT CGGCGCTCAT 
    CAAGATGCTG CTTCAGAAGG GATATGCTGT CAACACGACA ATCAGAAACC 
    CTGATGACAT GAGGAAGAAT TCCCATCTCA AGGGGTTGGA GGCACTAGGC 
    ACCTTGAAGG TCTTCCGTGC CGACCTTGAC GAAGATGGCA GCTTCGATGA 
    AGCCGTCAAC GGCTGCGATT ACGCCTTCCT CGTCGCCGCT CCGGTGAATC 
    TCCAGTCAGA GAATCCTGAG AAAGAGATGA TTGAAGCCGG CGTCCAAGGA 
    ACCCTGAACG TGATGAGATC GTGCCTGAGA GCCGGCACGG TGAAGCGCGT 
    GATTCTGACA TCGTCGGCGG CCGCCGTCGC CCTCCGTCCG CTGCAAGGCG 
    GCGTCGGCCA TGTCCTGGAC GAGTCGTCCT GGTCCGACGT CGACTACCTG 
    ACGAGAGAGA AGCCACCATC TTGGGTCACA TTCTACTCCT TTCTTTTTTG 
    GTCCTCCATC AAATCATTCA TATACATTTT TTACCGGGCT GATGAAAATG 
    ACGGCTGGCT GATGCTAGCA CACCCCATTG TTTTTGCGTT TGCGTTTTGC 
    AGGCGTATGG TGTCTCGAAG GTGCTTTTGG AGAAGGCGGC GTGCAAATTC 
    GCGGAGGAGA ACGACATCAG CCTCATCACC GTGCTCCCGG TGTTCACCTT 
    GGGCGCGGCG CCGACGCCGT TGACCACAAC AAGCATCCCA ACTACGCTCT 
    CCTTGCTGTC TGGTGATGAG GCGCAGCTAA AAACCCTGAA AGGCCTGGCG 
    GCCACCGGCT CCATTCCGGT GGTTCACGTG GACGACGTCT GCCGCGCCGA 
    GATATTCCTC GCGGAGAAGG AGTCGGCGTC GGGGAGGTAC ATCTGCAGCA 
    GCCTCAGCAC CACCGTGATG GCGCTCGCAC GTTTCGCGGC AGCAAAATAC 
    CCTCAGTACA ACGTCCAAAC CGACTGTTTC GAAGGGTTCC CTGAGAAGCC 
    GAGAGTGTGC TATTCGTCGG AGAAGCTGAC GAGGGAAGGG TTCGAGTTCA 
    AGTGGACGGA TCTGGACGAG ATATTCGGCG ACCTCGTCGA GTACGGCAAG 
    GCCCTGGGGA TTCTACCGCA CTGAATTGAT GGTTGCTCCG TCAATTTGGA 
    GTTTTGGACA TAAAAATTCT CTTGTGAAAT TGTTAGTCCT CTTGTCTTGT 
    GAAATAAGTC ATTGTTGTGT GTTACGGT

    Gene models with high sequence identity

    1. AT5G42800.1 [+] show detail - dihydroflavonol 4-reductase
      E-value: 3e-58; Score: 102.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam 3-beta hydroxysteroid dehydrogenase/isomerase 2.2e-16
    HMMPanther CINNAMOYL-COA REDUCTASE 8.8e-82
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 8.8e-82
    HMMPanther CINNAMOYL-COA REDUCTASE 3.3e-78
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 3.3e-78
    superfamily NAD(P)-binding domain 3.4e-16
    superfamily NAD(P)-binding domain 7.4e-31
    Gene3D NAD(P)-binding domain 3.8e-05
    Gene3D NAD(P)-binding domain 2.8e-20

    See the detailed result >

    AT5G42800.1

    Model type
    Protein coding
    Short Description
    dihydroflavonol 4-reductase
    Curator Summary
    dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.
    Computational Description
    dihydroflavonol 4-reductase (DFR); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G45400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR