K21650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21650

Determination of introduced cDNA(s)

  • J033148G11 - Rice Full-length cDNAs - Original: J033148G11

    full reading [+] show sequence

    Nucleotide sequence: J033148G11 - full reading 
    GGGGGGAAGA ACACAACACA GCAGGTGAAG CGAGAGAGAG AGAGAGAAGC 
    CACAGGCGCA GCCTCCTTGC TCGCATCATC ATCCATGGCG GCGACCGCGC 
    CTCGTCTCCT CCTGATGGCT CTCATGGCCG CCACCCTCGC CGGCCGGTCA 
    GAGGGGGCGT GGTGCATTTG CAGGCAGGAC ATGCCGGACA GCACGCTGCA 
    GAAGACGCTG GACTACGCGT GCGGCGACGG CGCCGACTGC AAGCCCATCC 
    AGCAGAGCGG CGCCTGCTTC AGCCCGGACA CCGTCAAGGC CCACTGTTCC 
    TACGCCGTCA ACAGCTTCTA CCAGCGCAAC AACCAGAACT CCCAGGCCTG 
    CGTCTTCTCT GGCACCGCCA CCCTCGTCAC CACCGACCCA AGCTCCAACG 
    GCTGCATGTA CCCTGCCTCT GCTAGCGCTG CTGGGACGGG CACACCGACA 
    AGCGGCACCG GGGGCAGCAC TGGCGTGGAC GGCCCTCCTG GAATGGGGCT 
    AGGTCCTTCA AGCTTCAACG ACAACAGTGG CGCCAGCCTC CTCCCGGAGG 
    TCGGAACGGC GATGTGGATA CTGATCCTCG CTTGCTCAAT CATGGTTCTG 
    AACTTTAGTT AGAGTTTAGG GCGTGCGATG AGGAGACAAG ACACCCCCTC 
    TCCTCCCCCC TTACTGTTCA GGGGTCTTGT TTCTTGCACT TTTCTTTCTA 
    GTGGTAGTGG TGGTGGTGGC AAGCAGAAAA CGAACCCTTT GATGACAATG 
    ATTGTATTCC ATTCTGGTGA AGAATTTGGG AGTGCTGAGA CCCTAACGGG 
    TTGCATGTTG CTGTGCTGCC

    Gene models with high sequence identity

    1. AT5G08000.1 [+] show detail - glucan endo-1,3-beta-glucosidase-like protein 3
      E-value: 4e-31; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart X8 1e-42
    HMMPfam X8 4e-29

    See the detailed result >

    AT5G08000.1

    Model type
    Protein coding
    Short Description
    glucan endo-1,3-beta-glucosidase-like protein 3
    Curator Summary
    Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.
    Computational Description
    "glucan endo-1,3-beta-glucosidase-like protein 3" (E13L3); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 1 (TAIR:AT5G61130.1); Has 1582 Blast hits to 1532 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 147; Plants - 1404; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR