K21708

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21708

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K21708

Determination of introduced cDNA(s)

  • J033105J16 - Rice Full-length cDNAs - Original: J033105J16

    full reading [+] show sequence

    Nucleotide sequence: J033105J16 - full reading 
    GCTGGATCCC CCTTGCGGTC TCGCTACCTC TTCCTCTCTC TCGTCGGCTC 
    GTCGCCGGCG CGCCACCTCC GCCGCCGTTG AAGCCCTCGC GTTCGCCGCT 
    TCTCTCCCCC AACCAACGAA GCCCTAGCGC GTTCGCCTCG CCGCCCACCG 
    GCGATGCTCT CCGGCGTCAA GTTTATCCCC CGGGAGCAGA TCGGCGAGGA 
    TGCCCTAGGC GGCGCCGGCT CGGCGGGGTC CGACAGCTCC GAGGATAGGC 
    GGCGGCGGAA GAAGCGGGGC AGGAAGGGGA GGGACAAGGA GGAGAGGCGG 
    GACCGGAGGC GCCGGCGGAG GCGGAGCAAG TACGGCTCGG ACTCCGAGGA 
    GGGGTCCGAT AGCGGAGACT CGATCGAAGA GGAGGAGGAG AAAGGGTTGA 
    GCCGGAGCAA GCACCGGAGG AAGCATCAGA GGCGGCGCCA TGAGTTCTCC 
    GATGACGACG ATGATGATAA CGAGGAGTCC AGTGGTGAAT CTGATAAGAG 
    AAGAGGCAGT CGCAAGAGCA AGCTTGGAGG TGCCGCAGGT GATGATGATG 
    ATGAGGAGGA GGAGGATGAG GGAATTGGAG GTGAGGAGTT GAGAGCTAGT 
    GATATTGTCA GGAAGGAGAT GGGCCTCGAA TGGATGCTCA AGTCGGCAAG 
    CAGTGGTCGG GCGGAGAGCA GCCAAGCTGG CGGGGCTGAC AAAGATGAGG 
    AGGAGGTTGC ACCCGAGGAG GTGAAGAAAG CCAATCCAAA GGAATTGAAT 
    CCATACCTGA GGGATAATGG CAGTGGGTAC CCTGATGAAT CTAGCCCTTC 
    AAATGCAGGC AACCAGTTGC TTGCTTCCTC TGTGGTTGGT GATGGAGGTG 
    CTAGCTGGAG GCTCAAAGCT TTGAAGCGTG CAAAAGAGCA AGCAGCTCGT 
    GAAGGAAAAC AACTTGAGGA GGTTGTTGGT GAGAGATGGG GCTCGTTAGG 
    CCACTTAGCT GCATCAGTGT CAGCATCTAG AGCTGCCCCT TCGCATGCTC 
    ATTTACATGC CATTAGAGGC AGAAAAGCTG GGCAAGCAGG CAGCTCAGAA 
    GAACATTCCA AAGAAAATCC AAAGGAGGGT CAGCAAGGTG GAGACAGTGG 
    TAGACGTGAA TACTTAAAAG ATGTTTCCTC TCGGCATCAT GCAATGAGAA 
    AACCTAAACC TGATTCTGTA CCATGGAAAA GGAATAGGCA GAATATTTCT 
    TCTGAGGATC AGGCACTTAT CTCTTCAGCG ATAGCAGGAA TCAATAAGTT 
    CTCTAATGAT GGAAGCTTTT TGGAAAAGAT TAATAATCTT GAAAGCAAGA 
    CTGTAAATGT TTTGACTGCA GAGGTTGATG AGCTCAAGTC TGATAAGGGT 
    AGCTCAAAGA AAGCACCTTC AGTTAGCACT CAAAAGCTAA ATGCGAACCA 
    GTTAGCAGCA AAGATTCTGC AGCTCCGAAT GAAAGGCAAG CATGAAGAAG 
    CTGAACAACT TTCGCGAGAA ATGGAGGCGG TGCTGGAGAA TGAGGATACT 
    GCTGTTGAAG AACCTAGGCA TGAAGTGAGG AGTTCAACCA GGAACACAAT 
    AAAGCCTAGT GCAGCTGATC GCAGGAAAAG AGAAGAGGAT GCTGACCGGC 
    ATCTTGCAAA TAAAATTATG CACAATAAAC AGTACAACAT GTCTAAAAGT 
    ATAGAGGATG AATATGATTT TGGTGATGCC CCCAGTAAGA AAGGCAAAAG 
    GAGGAACAAA GATGCACATG AGGAGAGGAG AAGCACTCAT TGGCTCACAA 
    CTCAGAAAGA GCGCTGTATG TATTGCTTCG AGAACCCATC ACGGCCAAAG 
    CATCTGGTTG TTGCTATAGG AAACTTCACT TACTTGATGC TGCCACAGCT 
    TGAGCCTGTT GTCCCTGGGC ACTGCATTAT TCTGCCATTG CAGCATGAGT 
    CTGCAACAAG AACAGTTGAT AGAAGTGTCT GGGAGGAGAT CCGCAACTTT 
    AAGAAGTGCC TCCTGAAAAT GTTCGCGCAG CAGGACAAGG ATATTGTTTT 
    CATGGAGACT GTTATAAGCT TGGCCCAACA ACGCAGGCAC TGCATGATTG 
    AATGCATCCC TATCCCCTCC GAAGTTTCAA ACAATGCTCC CATGTACTTC 
    AAGAAGGCAA TTGATGAAGC GGAAGAAGAA TGGACCCAGC ATGACATGAA 
    GAAACTTATT CCAACAAAGG GAAACCTGCA CCAAGTCATC CCAGAGAACT 
    TTGCCTACTT TCATGTAGAG TTCGGGCTCG ACCGTGGATT TGCCCATGTC 
    ATAGACGATG AGAGCAAATT CAGTGCAGGT TTTGGGTTGA ATGTCATCAG 
    AGGGATGCTC CAGTTGCGGG AAGAGGACAT GCACAGGCGC CGAAGGCATG 
    AATCGATGGA TAATCAGAAA CAAGCTGTTG CTAATTTCAT GAAGGACTGG 
    GAACCCTTTG ATTGGACCAA ACAGCTTGAT TAGATGTAAA TACAGTCACC 
    AGAACCTCTG TAAGAACAGC CTTCTGGAAA TTGTACGACG AATTTTTGTA 
    GGAAATGTCA TGTCCTGTAT TCATGTTAAC ACATTTGTTT CTTCACCTGA 
    TACTGAATGT AGCTTAAATC TATAATTTCG AAATTGACAT CAACCCCGGC 
    CATAACGCCA TT

    Gene models with high sequence identity

    1. AT1G56290.1 [+] show detail - CwfJ-like family protein
      E-value: 9e-161; Score: 564.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CWF19, CELL CYCLE CONTROL PROTEIN 3.7e-74
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Cwf19-like, C-terminal domain-1 3.4e-41
    HMMPfam Cwf19-like protein, C-terminal domain-2 1.4e-25

    See the detailed result >

    AT1G56290.1

    Model type
    Protein coding
    Short Description
    CwfJ-like family protein
    Computational Description
    CwfJ-like family protein; CONTAINS InterPro DOMAIN/s: Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein / zinc finger (CCCH-type) family protein (TAIR:AT5G56900.2); Has 2474 Blast hits to 2009 proteins in 284 species: Archae - 2; Bacteria - 39; Metazoa - 1047; Fungi - 300; Plants - 173; Viruses - 2; Other Eukaryotes - 911 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR