K21842

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21842

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21842

Determination of introduced cDNA(s)

  • J023086L13 - Rice Full-length cDNAs - Original: J023086L13

    full reading [+] show sequence

    Nucleotide sequence: J023086L13 - full reading 
    CCTCTCCCGA CTCCCGAGCG AAGCAGCGAG AGGCTAGAGG CAAGGAAGGA 
    GGCAGCAGCA GAGCAGAGCA GCCATGGCGG CCGCTGCTCT TCTCTCCCCT 
    CCTCCCTCTC CCTCTCCCTC CCCCACCCCG TCCTCGCTCC ACCCCAGGCA 
    AGCCCTCCGC TTCGCGGTTG GCACAGGAGG AGGAGGGCGC GCGCGCGCCA 
    CGTCGACGGG GACGAGACGC CGCGCGGCGC TCGTCCCGTG CTCCTCCAGC 
    GTGAGCGCGC GCGGCCCCGC TTCGGGAGGC GACGGGTTGG CCCTGGAGAG 
    GAGGCGCCTG CTGCTGTCCG GCCTCGTGTC TTCGTTCGTG CTCGTCCTCC 
    CGGTTTCAGA TTCGCATGCT GTTGCCGAGA TGGATGAAGA TGTGAAAATG 
    GCTACGCTAG TTGACCCGAT CAATGCATAT TCTTTTCTTT ACCCAGTTGA 
    ATTGCCAGGA AAGAAATTCA CATTCAAATG GGTAGAATCC AGAAAACCAG 
    AACGATATTC CTCTGCTGCA CCACTATCTC CTGATGCACG GCAACGTATT 
    GTATCGGAGC GAGTTGACAT GATACATAAC GTTGTCATCT CAGTCTCGAT 
    TGGGCCGCCA AATTCACGTT TTCCGCCTTC CAAGGACAAG AGCAAGTGGG 
    ATCCAAAAGA TGTTGCTGAT TGGATTTTGG CTGAAAAATC TTCACTGGTG 
    ACGACAGGCC AACGCATGAC AGAGAGTTCT GTCCTTGATG CACACTCTTC 
    AGATGTCGAT GGAGAACCAT ACTGGTACTA TGAGTATCTA GTTCGGAAAT 
    CTCCTACACA ATCTGCACCA GAACCAAATC TGTTTCGCCA TAACGTAGCC 
    TGCACTGCTG AACGAGATGG TTACTTGTAC TCCTTGAATG CTTCAACACT 
    CAGCAAGCAG TGGGAATCTA TGGGGCCTTC TTTACAGAAA ACAGTGGCAT 
    CCTTTCACCT CCTACCCCCT ACAGAAAATT ATGTTCCTCC ATACCAGGAT 
    CCATGGAGAT TTTGGTGACA TTGCAATTCG TTTCCTCCTT TTACTGTTTC 
    ACGTTTTAGG TGATCTTGGA ACATCAGGTT TTAGAACATA TTTTCCTGTA 
    ATGGATGCTT CAGTGATGTC TGCACTTTCA GTTCTACAAA ATGAAGCCTA 
    GTTCAGTTGT GC

    Gene models with high sequence identity

    1. AT5G11450.1 [+] show detail - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
      E-value: 7e-80; Score: 294.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 1.2e-06
    superfamily Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich 1.6e-31
    HMMPfam Photosystem II oxygen evolving complex protein PsbP 8e-11

    See the detailed result >

    AT5G11450.1

    Model type
    Protein coding
    Short Description
    Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
    Computational Description
    Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR