K22306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22306

Determination of introduced cDNA(s)

  • J033124M05 - Rice Full-length cDNAs - Original: J033124M05

    full reading [+] show sequence

    Nucleotide sequence: J033124M05 - full reading 
    TTGGGCGTAA AAGAAAGAGA AATCTCCCGG GGGCGTCTCG TCGTCTCCTC 
    CGCTCCGCTC CTTGCGCCAA GACGAGTCGC GGCTGCCGAT CTCCATCTGC 
    GCGAGCAGAG CAGAGCAGAG CAGGGTATCC TGGACCTGGG CCCACTCCTT 
    GTGATTAAGG GATTGTCCCG GGGAGCTTGG TGCACACAGT GATGGAGCCA 
    CGCATCGGCA ACAAGTTCCG TGTTGGCCGC AAGCTGGGGA GTGGCTCCTT 
    CGGGGAGATC TACCTTGGTA CCAATGTTCA GACCAACGAG GAGGTCGCTA 
    TTAAGCTCGA AAATGTGAAG ACCAAGCATC CACAACTGCT GTATGAGTCG 
    AAGCTGTACA GAATACTCCA GGGAGGAACT GGAATTCCAA ATGTTAAGTG 
    GTTTGGTGTC GAGGGTGATT ACAATGTTTT GGTAATGGAC TTACTAGGAC 
    CAAGCCTTGA AGATCTTTTC AGTTTTTGTA ACAGGAAGCT GTCTCTAAAA 
    ACTGTTTTGA TGCTTGCTGA TCAAATGATC AATCGCGTCG AATTTGTTCA 
    CTCCAAGTCT TTCTTGCATA GAGATATTAA GCCAGATAAT TTTCTCATGG 
    GCCTAGGTAA AAGGGCAAAT CAGGTCTATG TCATAGATTT TGGACTTGCA 
    AAGAAGTACA GGGATACATC AACACACCAG CACATCCCAT ATAGGGAGAA 
    CAAGAACTTG ACGGGAACAG CAAGATATGC AAGTGTAAAC ACTCATCTTG 
    GAATTGAACA AAGCCGGAGG GATGACATGG AATCTCTTGG ATATGTACTG 
    ATGTACTTCT TGAGAGGAAG CCTTCCGTGG CAGGGTCTAA AAGCTGGGAA 
    CAAGAAACAA AAATATGAGA AAATCAGCGA AAGGAAAATT GCTACTTCAA 
    CTGAGGCCCT CTGTCGTGGA TATCCTACTG AATTTGCATC TTACTTCCAT 
    TATTGCCGCT CGCTGCGCTT TGAAGATTCG CCAGACTACC AATATTTGAA 
    GAGATTGTTC AGAGACCTTT TTATTCCAGA GGGATTTCAG TTTGATTATG 
    TTTTTGACTG GACAATCCTG AAGTATCAAC AGTCACAGAT GACCAGTGCT 
    CCACCACGTG CCATTGCCCC TGCAACAGGA CAAAGCTCGG CGATGGCTCC 
    TATAGCAAAT AATAACAGGC TGTCAGCCAC CGAAGAGGGA AGGAGAAGCG 
    GCTGGTCAGA TATGGATGCG ATGCGGCGTC AGGTTCCACC TCCAGCTATA 
    AATGCAGGCA GCCTAGCCAA GCAGAAGTCC CCTATCGGAC ATGAGCAATC 
    AACTTCTAAA GATGCAGTGT TCTCCAGTTC GACTTTTTTG GGACGGTCAA 
    GCGGATCCTC AAGGCGACCT GCTGTCTCTA GTAGCCGAGA ACCAAGCACT 
    GAAGCTGACC AGTCACGTAG TCGTACAACA GATGCAAGTC CGGGGGCATT 
    CCAAAGATCA GGGGCCCCGC GGTGGAGTCC ACAGATGGTT GACTCCTCTG 
    ACAACAGGCG CACGCCTTCT GGCAGGCATC CATCGAATGC TAAGAACTAC 
    GAGTCGACCA TACGGGGCAT CCAGGGCCTA AATTTCGATG GCGATGATAG 
    GATTCAGTAC TAGTATGTCT CAATCTTGGC GGTGTGCATA TCATCAGAGC 
    CCCTACTCCA TGGGTCACGC CTGCTGAAGT GGAGTACTAA AGACCGGAAA 
    ATAAGAGGTT TGGTTGATTC TAAGGGGCTT TGGCCCTTAG CAACTGTTTG 
    GTGGACTCAT GGCAATGCTT AGGCTGTTTG TACAGGTTCC CATTTGTTTT 
    CATTGCGCGG ACATGTGCCC CTTGAATCTT GTTGTATTTG GAGAGATTTC 
    TGCATGCAGG GCTCTCATGC CATGTGCTTC TTTGGAAACT GGAATTGGAT 
    GACCGGTGGG GGAAGTTGGG GGATGCTTTT TTAAAGTTTG AATATTAGGG 
    AGAGGTGTCC AGCCTCTTGT AACTTATGGA CAAGGAAAAC TGCTATGAGA 
    AGAAGGGTTA TGTATGCTGT TTGTCACAGA CGTGAGTATG TTAGTTACTG 
    GTGATGATGT TCCTCTGTTC GTAGCAGAAA GTAGAGCATA GCTTGGGTGG 
    ATTTTAAACT GATTCTGTTG CTAATAATCT TCATGGATGA ATGTCAATGT 
    ACAAGTGAAG GTTT

    Gene models with high sequence identity

    1. AT1G72710.1 [+] show detail - casein kinase 1-like protein 2
      E-value: 0; Score: 636.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 1.5e-67
    ProfileScan Protein kinase, catalytic domain 29.771
    HMMPanther CASEIN KINASE 3.3e-214
    HMMPanther CASEIN KINASE-RELATED 3.3e-214
    Gene3D no description 4.6e-32
    Gene3D no description 1.5e-56
    HMMPfam Serine/threonine-protein kinase-like domain 5.8e-39
    HMMSmart Serine/threonine-protein kinase domain 5.3e-13
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.0035

    See the detailed result >

    AT1G72710.1

    Model type
    Protein coding
    Short Description
    casein kinase 1-like protein 2
    Curator Summary
    Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.
    Computational Description
    casein kinase 1-like protein 2 (CKL2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 69362 Blast hits to 63919 proteins in 2309 species: Archae - 34; Bacteria - 10202; Metazoa - 23661; Fungi - 6612; Plants - 12027; Viruses - 386; Other Eukaryotes - 16440 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR