K22308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22308

Determination of introduced cDNA(s)

  • J023097E09 - Rice Full-length cDNAs - Original: J023097E09

    full reading [+] show sequence

    Nucleotide sequence: J023097E09 - full reading 
    GGGTGGTGGT GTCCGTCGCA CGCCTCCCCC CAATCCTCGT GAGCCCTATC 
    CGATTCCGCA CCACCGCTAC TCGCCGCCGT CTCCTCCCCT CCTCCGCGCT 
    CCGCCTCACC CGCCCGCTCT CCTCCTCCTG CTCCGCGTCG CCGCTCGCCG 
    TCGTAGCCTC CATGGAGACG CCGCCGGAGA ACTACCGCAC CAACGTCGGC 
    ATCTGCCTCG CCGACCCCTC CCTCACCAAG ATTTTCACCG CGTCCAGGAT 
    CGACATCGCC AACACATGGC AGATGCCTCA GGGTGGTATT GATGCGGGAG 
    AGGATCCGAG GGAAGCTGCT TTCAGAGAAT TGAGGGAGGA AACGGGTGTT 
    ACATCTGCAG AAATGGTGGC TGAGGTCCCC GTTTGGTTAA CGTATGATTT 
    CCCTGTTGAT GTGAAAGAAA AGCTGAATGC TAGGTGGGGA GGAACGAACT 
    GGAAAGGACA GGCTCAGAAA TGGTTTCTAT TTAGATTTAC TGGGAAGGAA 
    GATGAGGTTA ACCTTAATGG TGACGGATCT GAGAGGCCGG AGTTTTGTGA 
    ATGGACATGG ATGACACCTC AGCAAGTTAT TGAAAAGGCA GTTGAATTCA 
    AAAAACCAGT ATATGAGGCA GCCCTGAAAC ACTTTGCCCC ATATCTACAG 
    TCAGATCCAG CAACTACAAC TTCATCATAG CTGCAACGAA TTTCCTGAAG 
    TTCTTTATAT AGAGCGCTCT CATGTTGCCA TAGATCCACA ATAATTTATT 
    AGTATGAATT AACGGATGCT AGTATCTTTG AATACTTGGC ATTATCCTGA 
    CAATTATTAT CCCAACATTG GATCGAAGTG TGCAAACTGA TACAATAATT 
    ATCTTGTTAC TTTACTCCGT ACCGTATTTC TACCTCC

    Gene models with high sequence identity

    1. AT3G10620.1 [+] show detail - nudix hydrolase homolog 26
      E-value: 7e-63; Score: 237.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NUDIX hydrolase domain 5.5e-51
    HMMPfam NUDIX hydrolase domain 4.3e-23
    FPrintScan NUDIX hydrolase 6.7e-07
    FPrintScan NUDIX hydrolase 6.7e-07
    PatternScan NUDIX hydrolase, conserved site 0
    superfamily NUDIX hydrolase domain-like 1.8e-27
    HMMPanther ADP-RIBOSE PYROPHOSPHATASE 1.8e-07
    HMMPanther UDP/ADP-SUGAR PYROPHOSPHATASE 1.8e-07
    HAMAP RPPH_MF_00298 31.26

    See the detailed result >

    AT3G10620.1

    Model type
    Protein coding
    Short Description
    nudix hydrolase homolog 26
    Computational Description
    nudix hydrolase homolog 26 (NUDX26); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 27 (TAIR:AT5G06340.1); Has 4741 Blast hits to 4739 proteins in 1213 species: Archae - 2; Bacteria - 2928; Metazoa - 13; Fungi - 1; Plants - 97; Viruses - 0; Other Eukaryotes - 1700 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR