K22316

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22316

Determination of introduced cDNA(s)

J023007B15 - Rice Full-length cDNAs - Original: J023007B15

full reading [+] show sequence

GATCTCATCT CAAGAAGAAA AATAATTAAT TACTCGCAGC AAAGGACGGA 
CAGTTTCCTG CGCAAATTCC ACGTTCCACC TTCCTCTTCG GTCGTCTCCG 
CCGGCTTGGA GTTGGGAGAA GAAGCTCAAA CGCGGAGGCC ACCACGACCA 
CCACAACACC ACCACCTCTT CTCCTAGTCA AACCCACCCT TCCCTTGTAA 
TCTTCGCAAC AACAGCAGGA CGGCAAGTTC GTAGCTTTCC CCTCCGCTTT 
ATACACCCGC ATCTCCAAAT CTGAGGAGTG AGGGGAGAAG ATAAAGAAAG 
AAAAGCGCGC ATTTTGGTGT CCGGGGAAGG GAAAAGGGCG GTTCTTGGCG 
TCGGTGGCGG GTTTTGTTTT TTGGGGGTGG AAGCGGTTGG TTTGGGGATG 
AGCAGCGGCC AGGAAGCCGG ATCGAGCTCC GGTGGATCCG GCGATGGCGG 
CGCGGCGGCG CCCAGGAGGA ACACCAGGAA GCCCAAGTAT TCCAAGTTTA 
CTCAGCAGGA GCTCCCAGCT TGCAAGCCGA TTCTTACTCC AAAATGGGTC 
ATTTCAGTTT TCGTTCTTGT CGGAGTCATT TTTGTCCCAA TCGGGCTTGT 
TTCGTTGAAG GCTTCACGAA AGGTTGTTGA GATAGTTGAT CGATACGATG 
ATGCATGTGT CCCAGCTAAT ACAACTGACA AGCTTGCTTA CATCCAGAAC 
CCAACAATAA GCAAAAACTG CAGAAGGACT CTTAAGGTTC CAAAGGATAT 
GGATGCACCA ATCTTTGTGT ATTACCAGCT GGATAACTTT TATCAGAATC 
ATAGGAGATA TGTCAAGAGC CGGAGTGATG CACAGCTAAG AGATCCCAAA 
AAGGCAAATG ACACCTCCAC TTGTGATCCC GAGGGTACAG CAAATGGAAT 
GGCAATTGTT CCTTGTGGTC TGATTGCATG GAGCATATTC AATGATACAT 
ATGGCTTTGT TCGCAACAGT AAGAACCTGC CAGTGGACAA GAAAAACATC 
TCTTGGAAGA GTGACAGGGA GCACAAATTT GGACGTGATG TCTTTCCAAA 
GAACTTCCAG AATGGTTCTC TTATAGGTGG AAAAACACTT GATCCAAATA 
AATCGTTGAG TAAACAAGAA GACCTTATTG TTTGGATGAG AACTGCTGCA 
CTTCCAACAT TCAGAAAGCT GTATGGTAGG ATACACACTG ACCTCAAGAA 
AGGTGACACC ATTACGGTGA CATTGGAGAA CAACTACAAC ACATATAGCT 
TTAGTGGCAA AAAGAAGTTG GTACTTTCTA CCTCGACATG GCTCGGTGGA 
AAGAATGATT TTCTTGGTCT AGCATATCTC AGTGTTGGTG GACTCTGCTT 
CTTCCTGGCA TTTGCATTCA CCTTGCTGTA CTTGATAAAA CCAAGGAAAA 
TGGGTGACAA CAACTACTTG TCATGAAACA GAAACCCTGC AGGCCGTTAA 
TAAGCTCTTC AAACTTTTAA GTTGCAAATT CAACATGAAG CAAGTTGGAT 
TATGGATTCA AATGTATCTT GTACTAGATA GCGGTTTTAT TTGTTAGCCG 
TGCTGGAGTG CCAATACGGC TTATACCAAT TAGGGCAGCG TTTATGAGCA 
ACACTGATGT ACATTATGTT GCAAAGAAAA ATATATATAT ATACAGCCTT 
CTTTTGTTGA AAATTTTAAA TATCCCAGAA GTTAAATGGA ATGATTTTTA 
TATTGTT

Gene models with high sequence identity

AT3G12740.1 [+] show detail - ALA-interacting subunit 1
E-value: 4e-129; Score: 458.00

InterPro Scan Digest

Program	Description	E-value
HMMPIR	Protein of unknown function DUF284, transmembrane eukaryotic	8.4e-210
HMMPfam	Protein of unknown function DUF284, transmembrane eukaryotic	5.9e-93
HMMPanther	Protein of unknown function DUF284, transmembrane eukaryotic	4.9e-142

See the detailed result >

AT3G12740.1

Model type: Protein coding
Short Description: ALA-interacting subunit 1
Curator Summary: Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.
Computational Description: ALA-interacting subunit 1 (ALIS1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G54320.1); Has 864 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
Link: InterPro Scan - TAIR