K22425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22425

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22425

Determination of introduced cDNA(s)

  • J013094G20 - Rice Full-length cDNAs - Original: J013094G20

    full reading [+] show sequence

    Nucleotide sequence: J013094G20 - full reading 
    GACACGCCTC ATCGACCTCC CAAGAACCAC CACCGCCTTC TCCCATGGCC 
    GCCGCCACCG TCTCCGTCCG CTTCCACCCG GCCGCATCCG CCGCGCGCTG 
    CGGCGGCGGC GGCGCTGACG CAGGACGACC TGAAGAGGCT GGCGGCGGTG 
    CGCGCGGTGG AGCAGGTGGA GAGCGGGATG GTGCTGGGGC TGGGGACCGG 
    GTCGACGGCG GCCTTCGCCG TCGCGGAGAT CGGGGCGCTG CTGGCGTCCG 
    GGAAGCTGAG CGGCATCGTC GGGGTGCCCA CCTCCAAGCG CACGTTCGAG 
    CAGGCGCAGT CGCTCGGCAT CCCGCTCTCC ACCCTCGACG ACCACCCCCG 
    CATCGACCTC GCCATCGACG GCGCCGACGA GGTCGATCCA GACCTTAACC 
    TCGTGAAAGG GAGAGGTGGT GCCCTTCTCC GGGAGAAGAT GGTTGAGGCA 
    GCATCAGACA AGTTCATCGT TGTTGTTGAC GAGACAAAGC TAGTTACCGG 
    CTTAGGAGGG AGTGGTCTAG CCATGCCTGT GGAGGTTGTG CAGTTCTGCT 
    GGAAGTACAA CCAAGTGAGA TTGCAGGATC TGTTTAACGA TGAAGGATGC 
    GAGGCGAAGC TGAGATTGGA TGAAGGCGGC AAACCCTACG TTACCGACAA 
    CTCAAACTAC ATCGTTGATT TATACTTCAA GACGCCGATC AAGGATGCGT 
    TGGCAGCAGG GAAGGAGATC TCAGCTTTGG AAGGCGTCGT TGAGCATGGG 
    CTGTTCCTGG ACATGGCGAC TTCGATGATC ATCGCTGGAA CAGATGGCGT 
    CAGTGTCAAA ACAAAGTGAG TTTTGGGGTT TTGTTGTTGC CGGTGTTGAA 
    TTTACGATTT TTTGTTGGGA TGTATAAGCT ATTGGGGTGT AAAAGCAGGC 
    AATAAGATGC TTCACTAATA ATAATTGAAT ATATTTCCCC ACTCTTTCAT 
    TGCTG

    Gene models with high sequence identity

    1. AT3G04790.1 [+] show detail - Ribose 5-phosphate isomerase, type A protein
      E-value: 2e-99; Score: 359.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribose 5-phosphate isomerase, type A 3.4e-113
    HMMPfam Ribose 5-phosphate isomerase, type A 1.9e-63
    HAMAP Ribose-5-phosphate isomerase, type A, subgroup 30.206
    Gene3D no description 1.9e-47
    HMMPanther Ribose 5-phosphate isomerase, type A 2.2e-109
    superfamily NagB/RpiA/CoA transferase-like 1.2e-41
    superfamily D-ribose-5-phosphate isomerase (RpiA), lid do 9.1e-18

    See the detailed result >

    AT3G04790.1

    Model type
    Protein coding
    Short Description
    Ribose 5-phosphate isomerase, type A protein
    Computational Description
    Ribose 5-phosphate isomerase, type A protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235; Bacteria - 3572; Metazoa - 110; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR