K22440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22440

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22440

Determination of introduced cDNA(s)

  • J033124G19 - Rice Full-length cDNAs - Original: J033124G19

    full reading [+] show sequence

    Nucleotide sequence: J033124G19 - full reading 
    CATGAACCCA AGCCACATCT TAGCTTAATT ACATAGCTCC TCCTCCTTTC 
    TCCACTGACT GCTCAGTGTG TTTTGCATCT CTCCATTGAG CAAGAGGAGA 
    AGGGAGGCTC AGCTAGCTAG CTAGCTACCA TCTATACTAG TATCAAGTTT 
    TTTTGTTCAG ATTTTTTTGT TGGAGGAAGA GTTCTAGGGA GATCGATATG 
    GCCTTCATGT CCATGGAACG CAGCACTTGG GCCTTCACCT TTGGCATCTT 
    AGGTAACTTA ATCTCACTAA TGGTATTCCT TTCGCCACTG CCGACGTTCT 
    ACCGGGTGTA CCGGAAGAAG TCGACGGAGG GGTTCCAGTC GACGCCGTAC 
    GTGGTGACGC TCTTCAGCTG CATGCTGTGG ATGTACTACG CGTTCGTCAA 
    GTCCGGCGCC GAGCTGCTGG TCACCATCAA TGGTGTGGGG TGCGTCATCG 
    AGACCGTCTA CCTCGCCATG TACCTCGCCT ACGCCCCCAA GAGCGCCAGG 
    ATGCTCACGG CGAAGATGCT GCTCGGCCTC AACATCGGCC TCTTCGGCGT 
    CATCGCGCTC GTCACGCTGC TGCTCTCCCG CGGCGAGCTC CGCGTCCACG 
    TCCTCGGCTG GATCTGCGTC GCCGTCTCGC TCAGCGTCTT CGCCGCTCCC 
    TTGAGCATCA TCAGGCTGGT GATCCGGACC AAGAGCGTGG AGTTCATGCC 
    ATTCTCGCTA TCCTTCTTCC TGGTGCTTAG CGCGGTGATC TGGTTCTTGT 
    ACGGGCTGCT CAAGAAGGAC GTGTTCGTGG CGCTGCCCAA CGTGCTGGGC 
    TTCGTGTTCG GCGTGGCGCA GATGGCGCTG TACATGGCGT ACCGGAGCAA 
    GAAGCCACTG GTGGCGTCGT CGTCGTCCGC CGTGGTGGCG GCCGGGCTGG 
    AGATCAAGCT GCCGGAGCAT GTCAAGGAGG TGCAGGCCGT CGCCAAGGGC 
    GCCGTCGCGG CAGCGCCGGA GGGCAGGATC AGCTGCGGCG CGGAGGTGCA 
    CCCCATCGAC GACGTGATGC CCTCGGAGGT GGTGGAGGTG AAGGTGGATG 
    ACGAGGAGAC GAACCGTACG GACGAGATGG CCGGTGACGG CGATCACGCT 
    ATGGTCAGAA CGGAGCAGAT CATCAAGCCT GACATGGCCA TTGTTGTGGA 
    AGTGTAGTCT GATTAAGCTT AGAGAACTAG TAGTAATTCT CTCATGTGAG 
    GTATAGCCAG CTAGCTGGTG GTACACAAAC ATAAACACGA ACACATGTTC 
    ATCGCGTACG TACTAGCTAC TAGGTGAGAC ACCTCTTGGC GTAGTACGTA 
    CAGTAGTACT CCGGCCAGAT CTAGTAGGGA CTGTATTGGC GCGTGACTCG 
    CCTGGTTCGT CCAGCTTGCA TGCAGAGACC GACCGAGCAA GCAAGCTAAT 
    TAAGCTGGCC CGACCGACCG AGTGCATGCG TGTTTTGTGA ACCTAGCTAC 
    TGAGGGGGGA GTGAAGGGTG TGGGTGTGCA ATCGACCGGC CTGTCGCGTC 
    GATGCTCTTG CTTAGCTTCA TTCGATTCAT GCAGTTCAAT AATAAAATTT 
    GGATTTTACT GC

    Gene models with high sequence identity

    1. AT3G48740.1 [+] show detail - Nodulin MtN3 family protein
      E-value: 2e-72; Score: 270.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RAG1-activating protein 1 homologue 1.4e-88
    HMMPanther RAG1-activating protein-1-related 1.4e-88
    HMMPfam MtN3/saliva-related transmembrane protein, conserved region 1.7e-29
    HMMPfam MtN3/saliva-related transmembrane protein, conserved region 4.8e-28

    See the detailed result >

    AT3G48740.1

    Model type
    Protein coding
    Short Description
    Nodulin MtN3 family protein
    Computational Description
    Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: homolog of Medicago truncatula MTN3 (TAIR:AT5G23660.1); Has 1006 Blast hits to 953 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 236; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR