K22506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K22506

Determination of introduced cDNA(s)

  • J033066P16 - Rice Full-length cDNAs - Original: J033066P16

    full reading [+] show sequence

    Nucleotide sequence: J033066P16 - full reading 
    GGCCATCAAA TTTCCGCCGC TCTCCTCCTC CTCTCCTCTT CTCCCTCCTG 
    CGCCGCCGCC ACCTCCTCCT CCCTCTTCCG CGCGCATATT CGCATCGCAT 
    AAATCGCACC AACCGCGCGG CAAGAGGAGA GGGAGGAGGA AGCCGACCTA 
    GCGGGCTAGC AGGCAGGGCG TCGAGCGGGT TGGAGGGTTT CTTGAGCGGG 
    TTCGCCAGCT CGAGCTGTTT GCTTGTGGGG TTCTTGTTTT TCTTTTCCGG 
    GATCTTTGGG TGATGGCTGC TGCTGCGGCG GCGGAGACGT CGGAGGCGTC 
    CACGGCCGGG CTCGCGCTCG CGGAGTCCAA CATCAACTGG CAGAGGTTGG 
    ACAAGACCAG GTTCCATGTC ATTGGAGCTA TCCTATTTAC TGCTCAGCAA 
    GGTGTTCTGC ACCCTACGGC CGTTGTGAAG ACCAGAATGC AGGTTGCAGA 
    AGGAGGGCTT TCACACATGT CTGGCTTTTC TGTTTTCAGA AGGATATTGA 
    GAAGTGATGG CATCCCTGGT GCTTTCAGAG GCTTTGGCAC CTCAGCAGTT 
    GGAGCACTGC CTGGCCGGGT CTTTGCTCTG ACTTCATTAG AGGTGTCCAA 
    AGAAATGGCA TTCAAATACT CTGAACATTT TGATATGTCA GAGGCATCAA 
    GGATTGCTGT AGCTAATGGT ATAGCAGGTC TAGTGTCAAG TATATTCTCA 
    AGCGCATATT TTGTGCCATT AGATGTGATT TGCCAAAGGC TCATGGCTCA 
    AGGACTACCA GGGATGGCCA CATACAGAGG CCCATTTGAT GTGATAAGCA 
    AGGTTGTCAG GACTGAGGGG CTCCGGGGCC TTTACCGCGG TTTTGGAATC 
    ACCATGTTGA CTCAATCTCC AGCCTCTGCC CTTTGGTGGA GTTCATATGG 
    TGGTGCTCAA CATGCCATAT GGAGGAGCTT GGGTTATGGA ATTGATTCAC 
    AAAAGAAACC ATCTCAATCA GAACTAGTTG TCGTTCAAGC AACTGCTGGA 
    ACAATAGCTG GTGCTTGCTC ATCAATAATC ACGACACCAA TCGATACCAT 
    TAAGACACGA CTTCAGGTGA TGGATAACTA TGGTAGGGGC AGGCCATCTG 
    TCATGAAAAC CACCAGGGTG CTGCTAGAGG AAGATGGCTG GAGAGGTTTC 
    TACAGGGGGT TTGGACCGCG GTTTCTCAAC ATGTCCCTGT GGGGTACATC 
    CATGATTGTA ACTTACGAGC TAATAAAGAG GCTCTCCGTC AAGCCGGAGT 
    GATGAGCCTT TTGGCTTCTG TTCCAAATAG ATGGTGTAAT CTTGAAGACC 
    CACAATCCTT ATCTGTGATG GGCTGACGGC TATCTAGTGA GTTCTTCTCA 
    AGAAAGGGAT TTGGAAAGTA ACAAAATCCA ATCAAGAAGT TTTAGTGATG 
    GAAACTGTTT TATAACTACA GGGGAAGTAT TAGCAAGTTA GTAGCTTAAC 
    AAGTTCCTCC TATACACTGT AAATATTTAC TAGGGTTCTG TATGAAGTTC 
    TTCTGAAGGT GCTTCATCCA GGATGTAATA GCCTGAGGCT TGCCCTGGCT 
    ACTGGGGGCA ACATGTACGC GGCTCATAAA ACCCTAAAAA TTTTGGCAAT 
    GAGCTTTTGT ATCTCTTTCC ATGAGGCAAC AAATTCCCAC GGTATCTCGC 
    TTGGTTTAAT TTGTTATCAT TTTTAGCAGA TTCTAGCTAG CCACGGTCTT 
    GAGATGGATG ATGTAGCCAA ACCAATTTAA TGGAAAATGT ACTCGCTTAA 
    TATG

    Gene models with high sequence identity

    1. AT5G15640.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 7e-96; Score: 348.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 4.8e-65
    HMMPfam Mitochondrial substrate/solute carrier 6.1e-12
    HMMPfam Mitochondrial substrate/solute carrier 2.5e-18
    HMMPfam Mitochondrial substrate/solute carrier 3.7e-21
    ProfileScan Mitochondrial substrate/solute carrier 12.473
    ProfileScan Mitochondrial substrate/solute carrier 21.204
    ProfileScan Mitochondrial substrate/solute carrier 21.912
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 2.1e-118
    HMMPanther Mitochondrial substrate carrier 2.1e-118

    See the detailed result >

    AT5G15640.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Computational Description
    Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR