K22749

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22749

Determination of introduced cDNA(s)

J013105J08 - Rice Full-length cDNAs - Original: J013105J08

full reading [+] show sequence

GACCTTCCTC CTCTTCTCTC TTATTCTCGT TCTCCTCTTC ATCTCGTTTT 
TCCCTTTCTC TTTCTCGCTC TCTTCTCTCC ATGGCGCTGT GGCGCACAAG 
GGCTGCGGCG CTGCGCCCCA ATTGTAGGGG GCGTCGCCGC CGCCTCTGCC 
TGGCTGCCCG GCGGGGTGCC GCCGCCGCCT CCTCTCTCCT TCCTTCCTTC 
TTCTTTTCCC CTTATCCTCC CTCTTTTTCT CTCTCATCCC AACTCTAACC 
CTACCCGTTG CCCTGCCTCT CCAATTGCCA TGGCTGCCGT GGAGATGGCC 
GGTGCCAAGC ACCGCGCAAC TCCGGCGGCC CCGACCTATC TCCATGAGTG 
TGCTCTCCGG TCTGTACTCC CCCCCCCCCC CCTCTCCTGA TTTCTAGTGT 
TTTATATTGG TAAGATGTTA TTCCCTTTTG TGCTACTGAT ATATGATTGT 
GGTGTACCAT TAGGTTAATC CTAATGGTCA ACTTAATGAC TCTATGCTAT 
GGATTGTAAT TACTAGTTCT AGGGTTCTAG ATCAATTGAT TTGCTAGATT 
GGATGATGCC AGTATGCCCA TGATGAATGA ATGCTCACAT GAATAAACCT 
ATGAATTGCA TTACTAAAAT AGAAATCACA CTAGCATGAT TAAATCCTTA 
ATTATGCTTA TGCAATGACC ATCAGAGATA TTGAAATTTG CTACATACTA 
ATAAACTAAC ATGATCAGAT CCTTATGTTG CCATGCTGAA TAGTAATCCA 
GAGGATTAAT ATGATTTCAT TCATACATGA TGCATCATGA CAGTATCACT 
TAAGGGATTT AATGTCCTAA AAATTATAAA TCTTGATCTT GATGTCAAAG 
TATACTGATT ACAGAAATCA CAGGAAAATA ATGGTGTTTT ATGGTATTGG 
TCTTAGCAAT GTTATGCTGA TCAACTACTA AGGTTCAGAT TCTGATATTA 
TGCTCTTCTA GATTACCTGA TATGGTGACC CTTGAGTTAT AAGTAAATAT 
ACCCTGTTAT AAGTAAATAT GCCTACTCTG TTTATTATTC CATATATTCA 
GAATAATTCT TGTACTGAAC TGCTACATGT TTAACAGAAT ACTAATATAA 
CTACAGATGT CCCTAAAGTA TTATTGGACC TATTATCATA CACCAACACA 
TATACAGTGT TACAGAGAGA TACCTATTGC GATTTTTTTC CTCTCCTCAA 
TTTGTAGGTC AGTGTCAACC GAAAGCAAAA ATATCAGCAA GTAAAAAGTG 
CACAAGCCAT GCACAAAAAT TTCCTTACGC ATTCGTGGTA AACAGAACTA 
GTGCTCTTCT GCAGCAAAGT TGGGTTCTGC TGGTTTTTGT AACAACCTTG 
CAGGCACACT TTCCTGCAGC CAGGCCTTGC GGGTGGCATT TCTCCTCAAG 
ATCCGCATCA TGTTGCCAGT GAAACGCGAA GCATATATTG CTGCCCTGAA 
GCTGAGAGTT GTAGCACCGT CATTAACGAT TGCGAACTGC AACCTCTTCT 
CCTTCTCGCG TAGAGAGTCT TCGATCTTCT TTCTGCAGTA CCTATGCCAG 
GCTGCTTGTA TGAAACAGGC TGCGAGTAGA ACTTAAGGGC TCGTCCGTTT 
TGGAGGAAAA ACAGAGGATT TCGATTTCTA ATGATTAATT

Gene models with high sequence identity

AT5G53130.1 [+] show detail - cyclic nucleotide gated channel 1
E-value: 6e-19; Score: 92.80

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	CYCLIC NUCLEOTIDE GATED CHANNEL, PLANT	2.2e-07
HMMPanther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	2.2e-07

See the detailed result >

AT5G53130.1

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 1
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 1 (CNGC1); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding, intracellular cyclic nucleotide activated cation channel activity, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, calcium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR