K22811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22811

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22811

Determination of introduced cDNA(s)

J023086L13 - Rice Full-length cDNAs - Original: J023086L13

full reading [+] show sequence

CCTCTCCCGA CTCCCGAGCG AAGCAGCGAG AGGCTAGAGG CAAGGAAGGA 
GGCAGCAGCA GAGCAGAGCA GCCATGGCGG CCGCTGCTCT TCTCTCCCCT 
CCTCCCTCTC CCTCTCCCTC CCCCACCCCG TCCTCGCTCC ACCCCAGGCA 
AGCCCTCCGC TTCGCGGTTG GCACAGGAGG AGGAGGGCGC GCGCGCGCCA 
CGTCGACGGG GACGAGACGC CGCGCGGCGC TCGTCCCGTG CTCCTCCAGC 
GTGAGCGCGC GCGGCCCCGC TTCGGGAGGC GACGGGTTGG CCCTGGAGAG 
GAGGCGCCTG CTGCTGTCCG GCCTCGTGTC TTCGTTCGTG CTCGTCCTCC 
CGGTTTCAGA TTCGCATGCT GTTGCCGAGA TGGATGAAGA TGTGAAAATG 
GCTACGCTAG TTGACCCGAT CAATGCATAT TCTTTTCTTT ACCCAGTTGA 
ATTGCCAGGA AAGAAATTCA CATTCAAATG GGTAGAATCC AGAAAACCAG 
AACGATATTC CTCTGCTGCA CCACTATCTC CTGATGCACG GCAACGTATT 
GTATCGGAGC GAGTTGACAT GATACATAAC GTTGTCATCT CAGTCTCGAT 
TGGGCCGCCA AATTCACGTT TTCCGCCTTC CAAGGACAAG AGCAAGTGGG 
ATCCAAAAGA TGTTGCTGAT TGGATTTTGG CTGAAAAATC TTCACTGGTG 
ACGACAGGCC AACGCATGAC AGAGAGTTCT GTCCTTGATG CACACTCTTC 
AGATGTCGAT GGAGAACCAT ACTGGTACTA TGAGTATCTA GTTCGGAAAT 
CTCCTACACA ATCTGCACCA GAACCAAATC TGTTTCGCCA TAACGTAGCC 
TGCACTGCTG AACGAGATGG TTACTTGTAC TCCTTGAATG CTTCAACACT 
CAGCAAGCAG TGGGAATCTA TGGGGCCTTC TTTACAGAAA ACAGTGGCAT 
CCTTTCACCT CCTACCCCCT ACAGAAAATT ATGTTCCTCC ATACCAGGAT 
CCATGGAGAT TTTGGTGACA TTGCAATTCG TTTCCTCCTT TTACTGTTTC 
ACGTTTTAGG TGATCTTGGA ACATCAGGTT TTAGAACATA TTTTCCTGTA 
ATGGATGCTT CAGTGATGTC TGCACTTTCA GTTCTACAAA ATGAAGCCTA 
GTTCAGTTGT GC

Gene models with high sequence identity

AT5G11450.1 [+] show detail - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
E-value: 7e-80; Score: 294.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Mog1/PsbP, alpha/beta/alpha sandwich	1.2e-06
superfamily	Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich	1.6e-31
HMMPfam	Photosystem II oxygen evolving complex protein PsbP	8e-11

See the detailed result >

AT5G11450.1

Model type: Protein coding
Short Description: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
Computational Description: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR