K23014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23014

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23014

Determination of introduced cDNA(s)

  • J023073F07 - Rice Full-length cDNAs - Original: J023073F07

    full reading [+] show sequence

    Nucleotide sequence: J023073F07 - full reading 
    GGTCCTCTCC TCGTCTCTCT CTCCCCAACC TACTCTCTTC TCCTGCAGTC 
    CAGCTCTCGG TTCCTTGCTC CTCCAAGTCT CCGTCGGATC CATCCTCCCC 
    TACCCCGCGA AACCCTAGCC TCCCGAGCCC CTCGCCGCCG GCGGATGGCG 
    ACGGCTTGAT CGGCCCTGGA CACCCGCCCC GCCTCGCCTC GCCTCTGCCT 
    CTCCCCGCTC CCCCCGCGCA TCTGATGTTC CTCTCCCGCA TCGTCCTCCG 
    CGACCTGGAC TCCATCGACT CCCCCGCCGC CTCCATGGCG TCCTCCAAGA 
    AGCTGGTGAC GCGTGACGAG TGGGAGCGGA AGCTCCGCGA CGTCAAGATC 
    CGCAAGGAGG ACATGAACCG CCTCGTCATG AACTTCCTCG TCACCGAGGG 
    CTTCGTCGAC GCTGCGGACA AGTTCCGCGT CGAGTCCGGC ACCCAACCGG 
    ATATTGACCT GGCCACCATC ACGGATCGGA TGGAGGTGAA GAGAGCGGTG 
    CAATCAGGGA ATGTTCAGGA GGCCATCGAG AAGATTAACG ATCTTAATCC 
    CACGATTCTG GACACAAATC CCCAACTGTA CTTTCATCTG CAACAACAGA 
    AGCTAATAGA ATTGATTCGT GCGGGAAAAA TAAATGAAGC TTTGGAGTTT 
    GCACAAGAAG AACTCGCTCC AAGAGGCGAA GAAAATCAAG TCTTTCTTGA 
    AGAAATAGAG AAAACTGTAG CACTTTTGGT TTTTGAAGAT ATAAAGAACT 
    GTCCATATGG GGAACTATTG GATGTTTCCC AACGATTGAA GACCGCAAGT 
    GAAGTTAATG CTGCCATTCT TACAAGCCAA AGTCATGAGA AAGATCCAAA 
    GCTCCCTAGC CTTCTAAAGA TGTTAATTTG GACTCAAAAC CAACTGGACG 
    AAAAGGCAGC ATATCCACGA ATCAACAATT TCTCCACTGC CGCACTTGAA 
    GATCCAGCGA TTTGAGGCCG CTCGGGGGGG GATGGCTAAA GAATGTAGGC 
    ACCATACCAT GACTGTTTTC ACACATTGTA CTTCCTGGAT CTGTTGTGCT 
    CTTCACCTGC AAGGCTGCAA CAGTGAATCC AGTGCTTTCT TCGGTCTTTG 
    ATCTCAAATG CAAAAAACGT GGAATCAGAA AAAAAAATCG CTCGTGTTGT 
    ACATGATGTA GAAGATGTTC ATCACATTTT AATCTGTGAA AAATGTTCGA 
    TTTGATTTGA GTCC

    Gene models with high sequence identity

    1. AT1G61150.1 [+] show detail - LisH and RanBPM domains containing protein
      E-value: 1e-100; Score: 363.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan LisH dimerisation motif 10.476
    ProfileScan CTLH, C-terminal LisH motif 14.825
    HMMSmart LisH dimerisation motif 7.9e-06
    HMMSmart CTLH, C-terminal LisH motif 1.8e-17
    HMMSmart Ran binding protein-like, CRA domain 2e-32
    HMMPfam Ran binding protein, CRA domain 1e-33
    HMMPfam LisH dimerisation motif, subgroup 3.7e-08
    Coil coiled-coil 0
    HMMPanther RAN BINDING PROTEIN 9-RELATED 1.2e-59

    See the detailed result >

    AT1G61150.1

    Model type
    Protein coding
    Short Description
    LisH and RanBPM domains containing protein
    Computational Description
    LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 1004 Blast hits to 957 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 468; Fungi - 227; Plants - 231; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR