K23140

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23140

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23140

Determination of introduced cDNA(s)

  • J013158G13 - Rice Full-length cDNAs - Original: J013158G13

    full reading [+] show sequence

    Nucleotide sequence: J013158G13 - full reading 
    TGAGAAGGCC TCGCGGCGGA GGAGGAAGAA GGAAGAAGAA GGCGAGGCGA 
    TGCCGCGGGA GGGGACGCGG ATGGCGGGGC TGTGGGAGCG CGAGGTCGGC 
    TGCCTCCCGC CCAAGCTCTT CGCCAACTCC GTCATGGCCT CCCAGGACTT 
    TGTGCGGTCT CTCGGTGTCC AGAAGAGGCT GCGGAAGCAC AGGGGCTGTG 
    TGAATACCAT CAGCTTTAAC GAGGATGGGA GCTTGCTCCT GTCCGGTTCG 
    GACGATCGGG CCGCTGTACT GTGGAATTGG CAAGAGGGGA CGCCTACCTT 
    CGCGTTCCAC ACTGGCCACA GCGACAATGT GTTCCATGCT CTGTTCATGC 
    CCTTCTCAGG TGACCGGAGC ATCATCACAT GCGCTGCTGA TGGACAGGTG 
    AGGCATTCGC AAATACAAGA AGGTGGTCGT GTAATTACAA ATGAGCTAGT 
    TGATACAGAG GTAGCAGTGC ACAAACTAGC TATTGAGCCT GGAAATCCTC 
    ACACATTCTT TAGCTGCGGA GATAATGGCT CCGTTTTTCT TTTTGACCTA 
    AGGGAGAAAT ATGTTGCTGA ACTCTTTAAA TGCGCAGAAG TTGATCATTT 
    TGGTGGTGAT ACCATTGAAC TCTATGCTAT TGCCATAGAC CCGAGAAAGC 
    CTAGTTGTTT TGCAGTTGCT GGATCTGATG AGTATGTGAG AATATATGAT 
    AGCCGCAAGA TTGATGTGAA TGGGAATTCT AGTTTTGGTC GGCCAATTGA 
    ATACTTTTGC CCTCCACATA TGATGGGCGA AAACAAAGAT GGAATATCTG 
    GTTTGGCATT CTCGCAGACC AGCGAACTAT TGGCATCCTA TAGTTATGAT 
    AACATCTACC TTTTCTCGAG AGAACATGGC TTACACTTCA ACAATATTGA 
    GGTAGGAAAA CGACTCCTGA TGGATGAGAT TGAAGGAGAC TGCCATATAA 
    ATACAGCTCC ATTACCCTTT TGTAGAGATA AGTTGCCTAC ACCTCAAATA 
    TTCAAGGGAC ATCGTAACAA GCACACCATG AAGGGTGTTA ATTTCCTTGG 
    GCCCAACTGT GACTATGTTA CCACTGGATC AGACTGTGGC CGTGTATTTA 
    TTTGGAGGAA GAAGGATGGG GAGCTTATGC GGGTTATGAA AGGGGATAAA 
    CAGATTGTGA ACTGTGTTGA GCAGCACCCT TATGGGATTG TTATTGCAAA 
    CTGTGGCATT GATAAAGATA TCAAGATTTG GGCTCCTGGT GGAAGTGAGA 
    ACCCTGACGA GGTTGAGACA GATTCTTGTT GCTCTGATAT CAGTGAGTCC 
    TATGACTCGG TTTACTTTGA TGATTACATA TTTTCCTCGG ATTTTGATTC 
    ATCTGAAGAG GACGACGAAG ACGACGACGA CGATGATGAT GATGATGACG 
    ATGACGAAGA AGATGGCCTT AGTGTTAGTA TCAACGAAGA CATGAGCTAT 
    GAAGAGAAAG ATGCAGCCAG CGACCATGAC AGCGATGTTT AAAGGTTGCA 
    TTCAGCTATT ATGAGACCGT AGGATGGTTC AGTCTTAGAA CATGGTCAGT 
    TAGGGGATCA TCGACAGTTT TGTATGATGT ATGCCTTAGG TTGTTTTATC 
    ATGTGTTCCT TTCTCAGTCC TCGGCCGTAT TGCTTGTACA TACATATACA 
    TATGCCTGAG ATAGCTAAGC AAAAGCATAC TTACATGTGG ACAAATTTGA 
    GTGGATGGAG AATTTTGTGT ATATT

    Gene models with high sequence identity

    1. AT4G38480.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-114; Score: 410.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart WD40 repeat 1e-05
    HMMSmart WD40 repeat 3.5
    HMMSmart WD40 repeat 2.1
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 5.8
    HMMSmart WD40 repeat 28
    HMMSmart WD40 repeat 0.039
    HMMPanther WD REPEAT DOMAIN 42A 8.3e-155
    HMMPanther WD REPEAT DOMAIN-CONTAINING FAMILY 8.3e-155
    ProfileScan WD40 repeat 2 13.65
    ProfileScan WD40-repeat-containing domain 15.795
    ProfileScan WD40-repeat-containing domain 9.916
    superfamily WD40 repeat-like-containing domain 9.5e-49
    HMMPfam WD40 repeat, subgroup 2.3e-05
    HMMPfam WD40 repeat, subgroup 1
    HMMPfam WD40 repeat, subgroup 1.2
    HMMPfam WD40 repeat, subgroup 0.68
    HMMPfam WD40 repeat, subgroup 0.015
    Gene3D WD40/YVTN repeat-like-containing domain 2.5e-45

    See the detailed result >

    AT4G38480.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR