K23218

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23218

Determination of introduced cDNA(s)

J033122D05 - Rice Full-length cDNAs - Original: J033122D05

full reading [+] show sequence

GAAAATCCAA TCCTCCTCCT CCAGATCTCT CCACCCCACC TCCGCCTCCC 
ATGTCCGCCT CCTCGCGCTT CGATCTCCGG GCCTCGTCGC ACCCGCACCA 
GCACGCCATC GGAGGCGGAG GCGGAGGCGG AGGCATGAGT GACGGTGGCG 
GTGGCGCGGC GGCGGCGTTC GCGGACGCGG GGAACCTCGA GCACTGCGCC 
AGGTACCTCA ACCAGACGCT CGTCACCTTC GGCTTCCCGG CCTCGCTCGA 
TCTCTTCGCC ACCGACCCCG TATCGATTGC GAGAACGTGC AACTGCATCT 
ATGCTCTTCT TCAGCAGCGG CAGCGTGATA TTGAGTTCCG GGAGTCTACC 
AATGATCTGC GTCAGCGTAT GCAGTCTGAT ATTTCTAGAT TAGAAGCCAA 
GATTGAAAGA ATGGATGCTC AATTAGCTGC AAAAGATCGC GAGCTGGCCA 
CATTGACTAG AACGGAGGCC AAAAACACTG CAACTTTGAA GGCTCAGATT 
GACAAGCTGC AACAGGAACG CGATGAGTTC CAAAAAATGG TTATTGGCAA 
TCAGCAAGTA CGTACCCAGC AAATTCATGA AATGAAGAAA AAAGAGAAAG 
AATACATCAA ATTGCAGGAG AAGTTAAACC AGGTATTAAT GGAGAAAAAG 
AAGGAATCAT CACGTTCAGG AATGGAAATA ATGAACTTGT TGCAGAAAGA 
AGGACGGCAG CGTGGAACTT GGAGTGGAAA AAAGAATGAC AATGATTATT 
ACAAAATGAT TGTTGATGCC TATGAGGTAA AGAAGCAAGA GTTGATGCAA 
GAAAATGCTG ATTTGCGAGC ACTATTGCGT TCGATGCAGA TGGATATGCG 
CGAGTTCCTC AATGCTCCAA ATGGAGTTCA ACAGCCAGCT GTTGTGGGCA 
ATGGACGACA GGAGGCAGGA TCTCCTCAGT CTCCACTTGG TGGCAAGACG 
GATGTCTTTG ATTTGCCCTT TCACATGGCT AGAGACCAGA TTGAAGAGAG 
TTTGCGCACT AAAATGGCTT CCATAAAGGC CCGAATGACA CAACTTCAAG 
ATGCCCAAAA GGGTGCAGAA GTGACATCAG AAGCTACCGA GCGGGAACTT 
GAACTTGAAG CTCAACTAGT TGAAGCTAGA AGCATTATCC AGGAGCAGGC 
ATCCCTCATG TCCAAGCACT TTACGAAGTC TGATAAACCA AGGAGGTTGA 
GTGGATTGGA TGCTGAGCGT GAGGCGGTTG CAGCTCAGGA GGTGTAAATT 
ATGTTTGTGT CGACCTTCAC AGGCTTCAGC TATCCAAGGC ACGTCACGAT 
GCCAACCTTT CATCGAGGTC TCATGTGTTT AGTAACCACC AAGCTTCCTC 
CTTGGTAAAC CTGTTGTTGC CATGGTAGCA TGACTTCTAG GCGTTCTCTG 
TGTAGTATTA TGTGCAGGAG CATCTCCTCC GCTGTTGCTA ACTGCCTGCC 
TCTGACTGTT ACATGTATCG CACTTCTACT GTTAGGGAGA ACAGATCAAT 
GTAGCTATTA TGGCCTACGA AATAGGCATC AATACCTTAC TTACAGAATT 
GTTATTCCCT TCTTTCAAAT GTGGAGCTAG TTGTGGCTGT TGACCTCTGG 
C

Gene models with high sequence identity

AT5G57410.3 [+] show detail - Afadin/alpha-actinin-binding protein
E-value: 9e-148; Score: 520.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN (AD	3.9e-63
HMMPanther	VERNALIZATION-INSENSITIVE PROTEIN 3	3.9e-63
HMMPfam	Afadin/alpha-actinin-binding	4.1e-43

See the detailed result >

AT5G57410.3

Model type: Protein coding
Short Description: Afadin/alpha-actinin-binding protein
Computational Description: Afadin/alpha-actinin-binding protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT2G18876.1).
Link: InterPro Scan - TAIR