K23249

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23249

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23249

Determination of introduced cDNA(s)

  • J023027K11 - Rice Full-length cDNAs - Original: J023027K11

    full reading [+] show sequence

    Nucleotide sequence: J023027K11 - full reading 
    GCCCAATTTA ACAGAGAGAG GCTCTCCACT TTGGACCTTT TTGGAGATGG 
    AGCTCCATCA CCATGGAACC AGCAGCGTCT GAGCTGATGG ATGTACACAA 
    GAAACTTCTC CTGGCCTCCC TCAGCTGTGT ACTTCTGATC CAAGTAGCAT 
    CGAGTGATGG CACTGCAGAG GGAGTTGGAA CAACAAGCTG GACATGTGTA 
    TGCACAGCTC ATCCACTAGG TGAACCAAAC TCAAATAGCA GCTTGTCGTC 
    GAATTGTTCT TCTTCCTGCC ATTGTCTACA AGCAGATGAT GATGGTGGCA 
    CAGGATCATG GAACTGCACA TGTGCTTCTG ACAAAGCCCT TAAAAAAGAA 
    CACACTGCAG TACATGATAG GGGCTGCTTC ACTTCCTGTA ACTGCACATC 
    CGGAATTTCT CAGGAAGGAA AGAAGCACGT CTCTAACAAA ACAGTGATAG 
    TTACACTGCT AGTATGTGTG ATCCTCACCA CTATTGCATT CCTTGGCACC 
    ACGGCGTACT ACCTGCGTCG CAAGGATGCG CTCTCTCCAC ATTCGCATGC 
    ATACTCCTTT GATAAGTACA CCAGCTGGAG CAGCAGATCA AACCTCGTCA 
    GTCATCGATC TTCTCCTCTT CCCCAACCAA AGCCAAAACC AAGGATCAGT 
    GTACTTAAAG AGTTTCTGTG CAGCTGCAAT CCAATATGTG GCAATGAAGG 
    TGGTCCGCTT CCCGGTGTCA TCGTCAGGTT CTCCTACTCG GAATTGGAGC 
    AAGCAACCGG GAAATTTTCA GATGAACATC TGATCGGAGT TGGAGGAACA 
    AGCAAGGTGT ACCGTGGACA GCTTAGCGAC GCCAAGGTCA TTGCCGTGAA 
    GAAGCTCAGG CCCCTCGGAG GCGCAGACGA AGACTTCGAG TTCCTATCCG 
    AGGTTGAGCT GCTGTCTCGG CTGAACCACT GCCATGTCGT GCCATTGCTG 
    GGTTACTGCA TGGAGAGCCA GGGCCGGCAG CTGGAGCGGC TGCTGGTGTT 
    CGAGTGCATG GGCAATGGCA ACCTGCGCGA CTGCCTCGAC CTCAAGCAGG 
    GGAGGAAGGC CATGGACTGG GCGACGCGCG TCGGCGTGGC GCTCGGCGCG 
    GCGAGGGGGG TGGAGTACCT GCACGAGGCG GCGGCGCCGC GGATCCTCCA 
    CCGCGACATC AAGTCCACCA ACATCCTGCT CGACGACAAG TTCAGGGCGA 
    AGATCACCGA CCTTGGCATG GCCAAGTGCC TGATGAACGA CGGCGTGACG 
    AGCTGCTCGA GCTCGCCGGC GCGGATGCTG GGCACGTTCG GGTACTTCGC 
    GCCGGAGTAC GCCATCGTGG GGAAGGCGTC GCTCAAGTCG GACGTGTTCA 
    GCTTCGGCGT GGTCATCCTG GAGCTCATCA CGGGGCGGCA GCCGATCCAC 
    CACCACCGCC GCCGGCGGCG GCGGGGGAGA GCCTGGTCCT GTGGGCGGCG 
    CCGCGGCTGC GCGACAGCCG GCTGGTGGTG GCGGAGCTGC CGGACCCGGC 
    GCTGCAGGGG CGGTTCCCGC AGGAGGAGAT GCAGATCATG GCGCACCTGG 
    CGCGGGAGTG CCTGCAGTGG GAGCCCGAGT CGCGTCCCAC CATGAGCGAG 
    GTCGTCCAGA TCCTCGCCAC CATCGCTCCT TCCTCCCGCA AGCACGCCGC 
    CGCCGCCACC TTGGTCACCC GCATCGGGAG AAGCAGCAGC GCCGGCGACA 
    CGATGCACAG CACTAGGTTA GCCGTGAAGT GCAGCGTCGG AGAGAGTTGG 
    CGATCGCCGG AGATGGAGGA GGAGACGGTG GTGGACTTGA CGGAGCCACG 
    GCTGGAGCCG GCCATCTTCT TCAATTAGCT AGATAGGCTA CCAAATTAGT 
    TGCATGCATG TAATGTAATG CTGCTGCTGC TGTACAGACA GACAAATTAA 
    CGAAAAAAAT CAAATCCATA CTAAACGCTA TTGAGAATCC

    Gene models with high sequence identity

    1. AT2G28250.2 [+] show detail - Protein kinase superfamily protein
      E-value: 3e-113; Score: 111.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 3.5e-06
    superfamily Protein kinase-like domain 3.4e-64
    HMMSmart Serine/threonine-protein kinase domain 1.7e-19
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.2e-13
    ProfileScan Protein kinase, catalytic domain 32.301
    HMMPfam Serine/threonine-protein kinase-like domain 9.9e-40
    HMMPanther SERINE/THREONINE SPECIFIC RECEPTOR-LIKE PROTE 1.3e-15
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.3e-15
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 6.9e-103
    Gene3D no description 7.5e-15
    Gene3D no description 5.6e-36
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT2G28250.2

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR