K23324

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23324

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23324

Determination of introduced cDNA(s)

  • J013089M03 - Rice Full-length cDNAs - Original: J013089M03

    full reading [+] show sequence

    Nucleotide sequence: J013089M03 - full reading 
    GTCTGGCCGA CCGGCAAGCA ACATAACCAC AATAGATCTT TCCCACAATC 
    TTCTAAATGG ATCAATTCCT GGAAGTTTCT CTGGCCTTCC CAATCTACAA 
    AGACTGTCAT TGGACAATAA CAATTTGGAT GGTTCTGTTC CATCAGATGT 
    CTGGCGGAAT ATTGATTTCA GTGGAAATAG AAGTCTTATA TTGGATTTCC 
    AGAACAATTC TCTAACCAAT CTATCAAATC CTCTTTCACC ACCTGCCAAT 
    GTTACCATCC TGTTATCTGG AAACCCCATC TGCACATCTC CAAATCAACT 
    GAACATTACT CAGTACTGTC AATCAGTGCC AGTTATTGTG CCTGACGGTT 
    CTGCAAGTAA TGCCACAGTT TGTCCGCCAT GCTCTACTGA CCTTCCGTTT 
    GAAAACATAC TGATGTCACC AATACGATGT ATATGTGCTA TTCCACTTTA 
    TGTTGATTAC CGGCTAAAGA GTCCTGGATT TTGGGATTTT GTTCCATATG 
    AAGGACAGTT TCAACAGTAC TTGTCATCTG GACTTTCATT GTCTTCTTAC 
    CAATTAGAAG TTTCTCAATT TATGTGGGAA GAAGGCCCAC GGGTGAAGAT 
    GAATCTGAAA CTGTTTCCAA ATAACACTGC TTATTTTAAT AAGAGCGAGG 
    TGTTAAGACT GAGAGGAATG TTCACAGGCT GGCTGATTCC AGACTCTGAT 
    ATATTCGGGC CCTATGAGCT CCTCAACTTC AATCCAGGGT GGTATAACAA 
    TTTATTTCCA GATCGTGCAA AGTCCAGCCT AAGTACAGGT GCCATTGTTG 
    GTATTGTCGT GGCAGCGTTT GCTGCAGCAG CATTTCTTTC ATCCCTCATT 
    ACTCTCATTA TACTGAGAAG ACGTTCAAGA TATTCTTCAA AAAGACGCTC 
    TGCAAAAAGA ATTCCAATGA AGATTGATGG TGTAAAAGAC TTCAGTTTTC 
    AAGAACTGTC ACATGGTACA AACGACTTTA GTGACTCAGC ACTAATTGGT 
    CAAGGAGGGT ATGGGAAAGT GTACAGAGGT ATTCTCTCTG ATGGAACAAT 
    AGTAGCAATA AAACGTGCGC AGCAGGGATC TCTTCAGGGT TCGAAGGAGT 
    TCTTCACAGA GATAGAATTG CTGTCCAGGC TGCATCACCG GAACCTTGTT 
    TCATTGCTTG GTTATTGTGA TGAAGAAGAT GAGCAGATGC TGGTATATGA 
    GTTTATGCCT AATGGTACTC TACGTGATCA TCTTTCAGCT CGATCAAAAG 
    AGCCCCTAAA TTTTCCCACG AGGTTACGGA TTGCGCTGGG GTCGTCGCGA 
    GGCATCCTCT ATTTACACAC AGAAGCAGAC CCTCCAATAT TTCACCGTGA 
    CATCAAAGCA AGCAATATTT TACTGGACTC AAAGTTTGTC GCAAAAGTTG 
    CTGATTTTGG TCTCTCTCGG CTTGCCCCAG AGCCAGAATC AGAGGGGATT 
    GCTCCTGGTC ATGTGTCAAC TGTTATAAAG GGTACCCCGG GTTATCTTGA 
    TCCGGAGTAT TTCCTTACTC ATAAGCTGAC AGACAAAAGT GACGTGTACA 
    GCCTTGGTGT TGTTTTTCTG GAACTGCTGA CAGGGATGCA ACCTATTTCT 
    CACGGAAGAA ATATAGTTAG AGAGGTTGTT GCGGCCAATC AGAGTGGGAT 
    GATATTGTCA GTGGTTGACA GCCGGATGGG ATCGTACCCA GCAGAATGCG 
    TGGAGAAGTT TGCTGCACTG GCACTGAGAT GCTGCCGAGA CGAGACGGAC 
    GCAAGGCCGT CCATAGTGGA GGTGATGAGG GAGCTGGAGA AGATATGGCA 
    AATGACACCG GACACCGGGA GCATGTCCTC ACTATCCTTG GAACCTAGCA 
    ACACAGCCAC CCCATCGTCG GGATCCAGGA TGATGGTTTC ATCGTCATCT 
    GGGGTTGGAA ATGATGATCA CCATCACTAC AACATGTCAT CATCCGATGT 
    CTCCGGCAGT AACCTCCTCA GCGGTGTTGT ACCTAGCATC AATCCTCGCT 
    GAACATTATT TGTTATATAC TCCATAGTGT AAGACACGCA TGTATTTAAA 
    GATTTAACTT TAAAAACATC TGACTAACAA GTAGTGTAAT GTAAATCGAA 
    TTTTATTTGC TG

    Gene models with high sequence identity

    1. AT1G06840.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 0; Score: 644.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 38.958
    HMMSmart Serine/threonine-protein kinase domain 2.9e-41
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.8e-32
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-152
    superfamily Protein kinase-like domain 4.8e-81
    superfamily L domain-like 2e-10
    HMMPfam Serine-threonine/tyrosine-protein kinase 5.9e-46
    Gene3D no description 7.8e-06
    Gene3D no description 7.4e-24
    Gene3D no description 5.3e-49

    See the detailed result >

    AT1G06840.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR