K23626

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23626

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23626

Determination of introduced cDNA(s)

  • J023110O20 - Rice Full-length cDNAs - Original: J023110O20

    full reading [+] show sequence

    Nucleotide sequence: J023110O20 - full reading 
    GGGTCCCTCG CCTCGCCTCG CGTCTCCTCC TCCTCCTCCT TCCCCTCCCC 
    GCCTCCAATT TCTTCCTACT CCTCCCGCCT CCCCGCGAAG CTTCCCCACG 
    CCTCAGCCGC CAATCCAGCC CTAGTGTGGC GGCGGCGGCG GCGGCTTCTA 
    GAAGCCCTCC TCTTCCCGGA CTCCAGGATG GCGGCGGTGG CGGGTAGCGC 
    GAGCGCAGGC GCCAACGGTT CGGCGGCGGC GCATCGGGTG GGGGCGCCGA 
    CGAACCCCAT GGCGACGGCG CTGCTCACCG ATCAGTACCA GTTCTCCATG 
    GCCTACGCCT ACTGGAAGGC CGGCAAGCAC GCCGACCGAG CCGTGTTTGA 
    TCTGTACTTC AGGAAAAATC CATTTGGTGG AGAATTCACT GTTTTTGCTG 
    GTCTTGAAGA ATGCATTAAG TTCATTGCAA ATTTTAAGTT CACAGAAGAT 
    GACATTTTGT TCCTGCAATC AGTCATGCCA ATGTGTGAGG ATGCGTTCTT 
    TGATTATCTC AGGAAAACCG ACTGCTCTGA TGTGGAAGTG TACTCCATTC 
    CTGAGGGTTC AGTGGTTTTT CCAAAAGTTC CTTTGATGCG AGTTGAGGGT 
    CCAGTTGCTG TGGTCCAACT ACTTGAGACA CCGTTTGTAA ATCTTATCAA 
    TTATGCCTCT TTGGTAACAA CAAATGCTGC GAGACACCGC CATGTTGCTG 
    GAAAATCAAA AGTTTTACTG GAATTTGGTT TGAGACGAGC ACAGGGGCCT 
    GACGGTGCAA TAAGTGCTTC AAAGTATTGT TTCATGGGAG GTTTTGATGC 
    AACCAGTAAT GTTTTGGCTG GAAATCTGTT TGGCATACCA CTTCGCGGAA 
    CACATTCTCA TGCTTATGTT AGCTCATATA TGAGCCTTGA TGAGATCCCA 
    GACAAGTCCC TCAAGAGCAA AGATGGTTCA AGAGTCTGCA AAGATTTTGT 
    TAGTTTGGTA AAAGAGTGGC TTCAAAAGAT TCAGTTAGCA GATTCGTTAT 
    GTGGTGTATT TGGTGAGACA AATCAAAGTG AGCTGGCAGC ATTTGCATCC 
    TATGCATTGG CTTTTCCGAC CAATTTTCTA GCTCTTGTGG ACACATATGA 
    TGTTATGCGA AGTGGAATTC CAAACTTCTG TGCAGTAGCG CTAGCACTCC 
    ATGACTTAGG GTACAAGGCA TCTGGTATTA GATTAGATTC TGGTGATCTG 
    GCCTATTTGT CTATTGAGGC CCGTAAAGTG TTCCGTACAC TAGAAAAGGA 
    GTTTAATGTG CCCGCTTTTG GGAAGATGAT AATTACTGCT AGCAATGACC 
    TGAATGAGGA AACAATTGAT GCCCTGAACA AGCAGGGCCA TGAAGTTGAT 
    TCCTTTGGTA TTGGAACTTA TCTAGTAACA TGTTATTCCC AGGCTGCTCT 
    TGGCTGTGTC TTTAAGCTAG TTGAGATAAA CAGTAGACCT CGTATCAAAC 
    TTTCTGAGGA TGTGGCTAAA GTATCCATTC CATGCAAAAA GCGATGTTTC 
    AGATTGTATG GAAAAGAAGG CTACCCCTTA GTAGATATCA TGATGCGTGA 
    AAGTGAACCA TCACCGAAGG CTGGAGAACG AATCCTTTGT CGTCATCCAT 
    TCCTTGAATC CAAGAGAGCA TATGTTGTCC CCCAGCATGT TGAGGAGCTC 
    CTACAATGCT ACTGGCCTGG TACATCAAAT AAACCTAGGG TAGAGTTACC 
    CTCTCTAGAG GAGATCAGGG GCGCTGCATG CAACAGCTTG AAAAACTTCG 
    ACCAGATCAC ATCAGGCGGT TAAATCCGAC ACCTTACAAG GTGAGTGTGA 
    GTGCAAAGCT GTATGAGTTT ATCCATTCCC TATGGTTGAA TGAGGCCCCA 
    GTAGGAGAGT TACAATAGAT TTCTACAGAA GTTGGGAAAA ACAGAGAAGC 
    GTATTCTTTG AAGCATAGCA AAATAGCAAT ACATCAAAGA AAAGTAGAGC 
    TCTGTTGTAA AAAAATAAAA AAAATCGTCA GTTCATGGGC CCAACCTTAT 
    AGGATTTTTG CTCCCCAATT TTTATTAGTA CAAACTAGTT ATCAGTATAG 
    AGATAGGCCA ACCTATCTGA CTGTACATCC ATGATCCATT GTACTATACG 
    TCGTTATGGA ATTGAACATC CTTTTTGG

    Gene models with high sequence identity

    1. AT2G23420.1 [+] show detail - nicotinate phosphoribosyltransferase 2
      E-value: 0; Score: 92.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Nicotinate phosphoribosyltransferase-related 1.5e-16
    HMMPanther NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1.5e-16
    HMMPanther Nicotinate phosphoribosyltransferase-related 5.9e-225
    HMMPanther NICOTINATE PHOSPHORIBOSYLTRANSFERASE 5.9e-225
    HMMPfam Nicotinate phosphoribosyltransferase-like 1.1e-11
    HMMPfam Nicotinate phosphoribosyltransferase-like 4.5e-23
    superfamily Nicotinate/Quinolinate PRTase C-terminal doma 6e-68
    superfamily Nicotinate/Quinolinate PRTase C-terminal doma 1.5e-41
    Gene3D no description 6.3e-54
    Gene3D no description 7.3e-27
    HMMPIR Nicotinate phosphoribosyltransferase-related 1.9e-185
    HMMTigr Nicotinate phosphoribosyltransferase putative 2.7e-161

    See the detailed result >

    AT2G23420.1

    Model type
    Protein coding
    Short Description
    nicotinate phosphoribosyltransferase 2
    Computational Description
    nicotinate phosphoribosyltransferase 2 (NAPRT2); FUNCTIONS IN: nicotinate phosphoribosyltransferase activity; INVOLVED IN: pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicotinate phosphoribosyltransferase-related (InterPro:IPR007229), Nicotinate phosphoribosyltransferase putative (InterPro:IPR006405), Nicotinate phosphoribosyltransferase-like (InterPro:IPR015977); BEST Arabidopsis thaliana protein match is: nicotinate phosphoribosyltransferase 1 (TAIR:AT4G36940.1); Has 2998 Blast hits to 2961 proteins in 1361 species: Archae - 146; Bacteria - 2405; Metazoa - 184; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR