K23725

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23725

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23725

Determination of introduced cDNA(s)

  • J033118G15 - Rice Full-length cDNAs - Original: J033118G15

    full reading [+] show sequence

    Nucleotide sequence: J033118G15 - full reading 
    GACATCAGAT GGCGGCCTCC AACACCACCA AGAAGGGCGG CGGCGGCGGC 
    GGCCCGGCGA TCGGCATCGA CCTCGGGACG ACCTACTCGT GCGTGGCCGT 
    GAGGCGGCGC TACCGCAGCG AGGCCATCAC CAACGACCAG GGCAACCGCA 
    TCACCCCCTC CTGCGTCGCC TTCACCGCCG CCGACCGGTT CGTCGGCGAC 
    GCCGCCGAGA ATCAGGCCGC GCTCAACCCC ACCAACACCA TCTTCGAAGT 
    GAAGCGACTG ATCGGCCGCC GGTTCAGCGA TAAGTCTGTA CAAGAGGACA 
    TCAAGCTTTG GCCTTTCAAA GTCATTGCTG GCCGTGACGA CCGGCCAACG 
    ATCGTGGTCC GCCATGAGGG CAAGGAGAAG CAGTTCGTCC CCGAGGAGAT 
    CTCCGCCATG GTGCTCTCCA AGCTGAGGGA CGCCGCCGTG GCCTACCTCG 
    GCGAGCCGGT CACGGACGCC GTCATCACCG TCCCCGTCTA CTTCAACAAC 
    GCCCAGCGCG AGGCCACCCT CGACGCCGCC ACCATCGCTG GCCTCAACGT 
    CATGCGCATC ATCAACGAGC CCTCCGCCGC CGCCCTCGCC TATGGCCTCG 
    ACAAGATGCC GCCGGCCAGC GGCGGTGCAG GGAGGATGGT GCTCATCTTT 
    GATCTTGGTG GCGGCACCCT GGATGTCTCC CTCCTTAACA TTGGTCGTCC 
    GGGCAACAAC AACAGCAGCG GCAGCGGCAG CTTCGAGTTC GAGGTGAAGG 
    CCGTCGCCGG CGACACTCAC CTCGGCGGCG CCGACTTCAA CAACGCGGTT 
    GTGAAGCACT GCATCAACGA GTTCATCAGG AAGCACGGCG TGGCAGCAGA 
    AGGCATCTGG AGCAACCAGA AGGCGATCAG GAGGCTGAGG ACCGCGTGCG 
    AGAGAGCCAA GAGGATGCTG TCTTTCACGA CGCTTGCCAG CATCGAGGTC 
    GACTCGCTTC ACGACGGCAT CGACTTCTGC GGCAAGATGA GCCGGTCCCG 
    GTTCGAGGAG CTGAACAAGG AGCTCTTCGG CAAGTGCGTC AAGGCCGTGA 
    AGAAGTGCCT CGAGGACGCC AAGATGGACA AGAACGCCGT GGACGACGTC 
    GTGCTCGTGG GCGGCTCCAG CCGCATCCCC AAGCTGCAGA GCATGATCCA 
    CGACTTCTTC GACGAGAAAA AGCTCCGCAG GAACGTCAAC CCCGACGAGG 
    CCGTCGCGTA CGGCGCCGCC ATCCAGGCCT CCGTCCTCAA CGGCGACGCC 
    GACGAAGCCG ACGACAAGAA GCAGGTGATG ATCCTGCGCG ACATCACGCC 
    CCTCTCGCTG GGGATCGAGG TCGGTCTCGA TCACACGATG AGCGTCGTGA 
    TCCCGAGGAA CACCTTCATC CCGACCAAGA AAGTGCGGCG TTACTCCACC 
    ATATTCGACA ATCAGATCGC CGTGAGCATC AATGTGTTCG AAGGAGAGAG 
    CGCGAGCATC CTCCGCAACA ACCTGCTCGG CAAGTTTGTG CTGTCCGGCA 
    TCCTCCCGGC GCCCAGGGGA GTGCCCCAGA TCGACGTCAC GTTCGAGTTC 
    GACGCCAATG GCGTCCTGCA CGTGTCCGCG AAGGACATGG GCACTGGGAG 
    CAAGAACAAC ATCGCCATTA CCAACCACAG CGGCCGGCTG AAGAAGGAGG 
    ACGTCGAACG CATGACGCGG GAGGCCAGGA GCTACAACAG GACCAGATCA 
    TCTCTAGCGA TAACTTCTGG GAACCTGGTG ATCTTTCAAT GATGTTCTGC 
    TTCTGCACCT GCTTGCTGGA TGTCTTACAT CTGCCCATCG AACTGATTTC 
    AATGACGGGG AAAAGTTTGT GCTACTAAAT TTTTTTGCTA AAACTAATCT 
    AGGTCTAGTG ACTACTTATC TAAATGAGCT AATGCGGAAG ATGATGCC

    Gene models with high sequence identity

    1. AT3G12580.1 [+] show detail - heat shock protein 70
      E-value: 0; Score: 630.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 5.4e-238
    HMMPanther Heat shock protein Hsp70 5.4e-238
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    Gene3D no description 4.3e-42
    Gene3D no description 7.8e-22
    Gene3D no description 3.9e-49
    HMMPfam Heat shock protein 70 5.7e-204
    HMMPfam Glutamate dehydrogenase, NAD-specific 4.5e-123
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    FPrintScan Heat shock protein Hsp70 4.1e-68
    superfamily Actin-like ATPase domain 5.8e-64
    superfamily Actin-like ATPase domain 3e-56
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 1.1e-43

    See the detailed result >

    AT3G12580.1

    Model type
    Protein coding
    Short Description
    heat shock protein 70
    Computational Description
    heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR