K23726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23726

Determination of introduced cDNA(s)

J033098F21 - Rice Full-length cDNAs - Original: J033098F21

full reading [+] show sequence

GTATCTCGAC TCGAGCAGAC AGGAAGAATG GCTTCCTCCA CCTCCGGGAG 
AAGAGGACGA GGACGACTCC TCTCGCCTGC GGCGGTTGTG CTGGCGGCCG 
TGGCTGTGCT GCTGTCGGCG TCACAGGCAC TGGGCGCCGT GCTACCCGCG 
CGTGTTCAGC TTCGGGGACT CGCTAACTGA CACGGGCAAC GGCCCTTTCC 
TCTACGGCAA CGAGTCCCGC CGGCCACCGC TGTGGCCACC CTACGGCGAG 
ACCTTCTTCC ACCGCGCCAC CGGCCGGGCC TCCAACGGCC GCCTCATCAT 
CGACTTCATC GCTGACGCGC TGGGGCTGCC GTTCCTGCGG CCGTACTGGG 
GCGGGCGGAC CACGGGGGAC TTCGCCAGCG GGGCCAACTT CGCGGTGGGC 
GGCGCCACGG CGCTCAGCCC GGACTTCTTC TGGGAGAGAG GCGTGCACGT 
GCGCGACACC GTGCACCTCG ACATGGAGAT GAACTGGTTC CGCGATCTGC 
TCGGCCTGCT CTGCCCAGAC GATCTTGCCG AGACCGAGGG AGCCACGGAT 
CCGGGTGAAG GCCAAGACCC GCAAGACCTT GAGCAAGATT GCAACGACAT 
GATGAATCAA TCTCTCTTCT TAGTCGGAGA AATTGGTGGC AATGATTACA 
ACCATCCTCT TATGGGCGGG GTATCCATTA GAAAGATTCG CAGCTTCACT 
CCGAGTATCA TTGCAAAAAT TTCTTCCACA ATCACTGTGA GTAATATGCC 
TATGGACATA CATACATATA TATAAGGTGT CTGGGCTTCA AGGTTTGAAA 
TACACGAATT GGCTCCAATT TTTGAAAATT TTCAACTTCT TGTTTTTATA 
TACCTAGATG CAAGAATTTG ATTCAACCCA TAATTAGCAG TAAAACAACT 
CAAATTCATG GATGGGAGAG AACCTTTTTA ATTTTGACAT GGGGAAAACA 
TCTTGTTAGT CTATAATTTA TTGATGTCTT ATTCTATATT TTATGGAATT 
CCTTCTTTGT AGCTGTGACA CATCTTCTTA TTTATGTGAG AGCTATAAAT 
GTCTTGATCA TATTTGCTGT AATATTTGTA AATGGCTCAG AATGGTCTAA 
AGATAAGAAT TTTTGGATTG TTAGAGATGG ACTCACTTCA CTCGTTTGTA 
TAACTAGTCC TTTTTCACCA TCACAAGCTC ATGTATCACA ACATGGAACA 
AGTGTATATG GCTAGTAATG CAATAGAGTT GAGTTTGTAG GAATTGATCG 
GGCTCGGAGC CAAGACGTTA GTTGTTCCTG GTAATCTCCC AATTGGATGT 
ATTCCACATT ATCTCATGAT ATTCAAGAGT GGTAAGAAGG AAGATTATGA 
GCCAGAGACA GGTTGCCTCA GGTGGATGAA CTAGTTCTCG CAATACCACA 
ACAGACTTCT TATGGATGAA CTAGAAAATT TACGGAAGCT TCATCCTGAT 
GTGGCCATCA TCTATGCCGA TTACTATGGA GCTGCTATGG AAATCTTCCT 
TTCCCCTGAA CAATTTGGAA TTGAGAATCC TTTGGTAGCT TGCTGTGGTG 
GAGGAGGACC TTATGGTGTA TCTGAAACTG CAAGATGTGG AAATGGTGAA 
TACAAGGTGT GCGATGACCC ACAACTGTAT GGGTCATGGG ATGGCTTTCA 
TCCATCAGAA GCAGTCTATA AGGCCATTGC AACTGGCCTG ATATGGGGTT 
CATACACACA ACCTCCAATC GCTACCACCA CCATTTCGTG CCTGCAAATT 
ACAGAGCTCA GTTCTTCTGT TGAATACAAG GTCCTCTATG ATTTGTAATT 
GTGTGACTAT ATTTTGTTAT TTTCATAGAA TGTATGTGCG GATAAAAGGT 
TCATGTGGAA TCGTCGAAAT AAGCTGGTAT TGTGCTGAAA TCGAGTTAAA 
CTTATGCCAT CGGGTCTTCT AACGGATTAG TTCTATGACT TCCATCTCAA 
GTGTGCCACC TCCCACCTCC ATGAATCAAA GCACTTAATT TTTTTTCTAT 
TTTCCTTCAT AAGTTGTGTT TTGTTTAGTT AAATTTTTTC CATGTACTGT 
TCATCTTGTC TTTAGTTCTT GATGGCTTAG TCAAAGACTA ATCATTTATA 
TATCTCAGTA GTTCATTTGT TTGATTATCT AGGTTGATAT AATCTAAATA 
TATTCGACCA TGT

Gene models with high sequence identity

AT1G28600.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
E-value: 8e-43; Score: 172.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	6.3e-07
HMMPfam	Lipase, GDSL	5.7e-07
HMMPfam	Lipase, GDSL	6.3e-08
HMMPanther	LATERAL SIGNALING TARGET PROTEIN 2	1.9e-05
HMMPanther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	1.9e-05

See the detailed result >

AT1G28600.1

Model type: Protein coding
Short Description: GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description: GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3320 Blast hits to 3269 proteins in 145 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 3140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR