K23749

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23749

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23749

Determination of introduced cDNA(s)

  • J033090H12 - Rice Full-length cDNAs - Original: J033090H12

    full reading [+] show sequence

    Nucleotide sequence: J033090H12 - full reading 
    GCTTCTTCCC TTTCCTCTCC TCCGCCGCCG CTCCCCCGAC TCCGGCGAGC 
    CCCCTTCCCC CCACCCATCG GCGCGGAGGA CGTTGCCGGG ATGAGCGTCT 
    CCCCTTCAAC CGGACGCGAT CTCCCGGGGC GCTCCCGTAT GCCCTTGCGC 
    TGCTAGAGAT CCGGGCTCTT CTCGGATCTC AGGAGTACAA GATATAGTGT 
    ACCAGCTCTC TCTCATTCAA CATGTGGAGT TTTGCGTCAA ACGCCATAGC 
    TGGAAGCATA AGGAAAAAAG CACAGCCCTC AAAATGCAGT CAATCCAATC 
    CTGATTGCTC TGATGATGAT GTTTCTTCAT GTGCAAGTAG AGAGGAAGGC 
    CTTGAATGTC CAATATGTTG GGAATCCTTC AACCTTGTTG AGAATGTTCC 
    CTATGTCTTG TGGTGCGGTC ATACAATGTG CAAGAATTGC ATCTTGGGTC 
    TTCAATGGGC TGTCGTCAAG TTCCCAACCC TTCCTATACA ACTGCCTCTC 
    TTCATCTCAT GTCCATGGTG TAACCTGTTA TCTTTCCGGC TAGTTTACAA 
    GGGAAACCTC AAGTTCCCAC GCAAGAACTA TTTTCTGCTA TGGATGGTTG 
    AGAGCATGAA TGGCGAGAGA GCAAAGTTCC ATTCCCCTAG TCATGAAGAG 
    CGCCATTCTT TATGCCCTTC TGGTGGTGGC CCAAGTTCCA GTCAACACCA 
    TCGAAGACCT GCTCCACGAA CAGAAAGCGC CAGTGGCAGA GAAAGGAGTG 
    TTGCTGGCAA CGTTTTCAAT ACTTACAGCA TCAGTGCATC TCTCCAAAAG 
    ATAATGTTGT CTTTTGTTCA GATGACAGCC AAGTTTCCAC TCGTGATAAT 
    TTTCCTTCTG ATAGTTCTAT ATGCTGTCCC TGCAAGCGTA GCAGTTCTAG 
    TATTGTATGT CCTTGTTACA GTTTTGTTTG CACTGCCGTC CTTTTTGATC 
    CTCTACTTTG CTTATCCCAG TTTGGATTGG CTCGTTAGAG AGATCTTCAA 
    TTGAGTTATA TTGTACTCCA TGTCATTACA GTTTATAACT CAGCAGCAGA 
    AAATTTAGCA TTTGCAATCT CATGTGCTCT GGGGGAGGAT GTCAAGTGTG 
    ATTTCTTATC CATTCGATTG AGGCCTTCAG GGACAGTAGT TGTAAGATGG 
    AACTCTAATT ATTGCATTGA TATACATGAA TCACTCAGGT TTTACTGT

    Gene models with high sequence identity

    1. AT3G29270.2 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 10.158
    superfamily RING/U-box 1e-10
    HMMPanther FAMILY NOT NAMED 4.9e-07
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 0.0078
    Gene3D no description 1.2e-05

    See the detailed result >

    AT3G29270.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR