K23913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23913

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23913

Determination of introduced cDNA(s)

J013007I03 - Rice Full-length cDNAs - Original: J013007I03

full reading [+] show sequence

GTTTGAGAAA GAGTAGAGGA GAGAACCAAA AGGGTTTCCA GAGCGGCAGC 
GGCTGCCTGC TTAGCTGCTG CTGATGCTGC AGGCTGCACC AAAGCAGCGA 
GCCTTTTTTT ACCTCTCCTA CTATACCACC ACCACCATCT CCTCTCCTCG 
GCTTCACTTC TCGCCTCTCC TTGTTGGCAC GGGCGGCGAT TGAGCCCGCG 
GCGGCGCCAT GTCGGGGCTG TACAGCCCGG GGTTCTCGCC AGCGAGGAAC 
CTCTCCCCCC AGATTAGGAG CAACCCGACG GATGTTGATA GTCAGTATCT 
GGCCGAGTTG CTCGCCGAGC ATCAGAAGCT GGGGCCGTTC ATGCAGGTGC 
TGCCCATATG CAGCAAGCTG CTGAGCCAAG AAATTATGCG GGTATCAAGC 
ATTGTCCACA ACCATGGATT TGGTGATTTT GACAGGCATC GGTTTAGAAG 
TCCTAGCCCT ATGTCTTCGC CAAACCCAAG ATCTAATCGC TCTGGAAATG 
GGTTTAGTCC TTGGAATGGG CTACACCAAG AGAGATTAGG TTTTCCTCAA 
GGAACCAGCA TGGATTGGCA GGGAGCACCA CCAAGCCCTA GTTCTCATGT 
TGTAAAAAAG ATTCTGCGTT TGGATGTCCC AGTTGATTCT TATCCAAATT 
TCAATTTTGT GGGACGCATT CTAGGTCCTA GAGGTAACTC TCTAAAGCGG 
GTGGAAGCAT CCACTGGCTG TCGTGTTTTC ATTAGAGGGA AGGGTTCCAT 
CAAAGATCCA GGGAAGGAGG ACAAACTCCG TGGAAAGCCA GGCTACGAAC 
ATCTGAGTGA CCCACTGCAC ATTTTGATAG AAGCTGAGTT CCCAGCCAGT 
ATCATTGATG CAAGATTGAG ACATGCACAG GAGGTTATAG AAGAACTGCT 
AAAACCAGTG GATGAATCAC AGGATTTCTA CAAAAGGCAA CAGCTCAGGG 
AGCTGGCAAT GCTAAACTCA ACCCTGAGGG AGGACAGCCC CCATCCTGGG 
AGTGTCTCTC CATTCAGTAA TGGCGGTATG AAACGCGCGA AAACGGGCCA 
GTAGAGAAGC AACTCTACCA CCACCCATTT GAGGTGGTAT CCAGGTGCCT 
TATGCCCTTA AAAAGGATGG CATTGGCACA CCTTCAGGCA TTGTTTGCCA 
TGGGTGTGTG TGAAGGAAGC AATGCAATGC ACCTTCACTA GATGGAGTTT 
GGTATCAGTC AGATTTTCGC CTTCAGGCAG GGGAAAACTT CAGGGACAAT 
GACAATAGTC GCAGATCGTC CGGTCGATCC ACCTTTGGTT TGTTGTAAGG 
TCTCAAGAAC ATTTGTTTTA TTTGTTATTG ACTGTTAACC CTAGTATGTG 
GTGCTATGGT AGGTTATCTC CATGACAAGC TAGAGAAGGC CTGGGATGTG 
AGCCTTTTTT TTTCTTCCAT TTACCCCCCA TTTAGGTGTT TAATTCACCT 
TGTATTATAT CCTTTCACAT TTATGGAGCT GTGAAAAATA AAAGAAGGAT 
GAAGGGTCAT CCTCTTTCTC C

Gene models with high sequence identity

AT3G08620.1 [+] show detail - RNA-binding KH domain-containing protein
E-value: 5e-106; Score: 382.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	K Homology, type 1, subgroup	0.00014
HMMSmart	K Homology	4.7e-08
HMMPanther	RNA-BINDING PROTEIN RELATED	5.4e-81
superfamily	Eukaryotic type KH-domain (KH-domain type I)	2.4e-20
Gene3D	no description	3.1e-41

See the detailed result >

AT3G08620.1

Model type: Protein coding
Short Description: RNA-binding KH domain-containing protein
Computational Description: RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT2G38610.2); Has 1326 Blast hits to 1325 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 146; Plants - 286; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link: InterPro Scan - TAIR