K24217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24217

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24217

Determination of introduced cDNA(s)

  • J023065P16 - Rice Full-length cDNAs - Original: J023065P16

    full reading [+] show sequence

    Nucleotide sequence: J023065P16 - full reading 
    GTTGTATATC TCGAAACCGC ACCAGCCGCC CATTGGGTTC TGCAAAGCGG 
    ATAGGCTCTG CATCAATGGA TGATATTAAA TCAATCAATA ATTGTGAAGG 
    GTTTGGTCAC AGTGGAAAAG CAAATGGTCG GTTGCAGACA CACGACCCAA 
    GTTCAGTGGT ATGTTTCCAT CCATCCAAGT TTTCCAAGAT AGAAGATGAT 
    GTACAGAAAA CATCATCACA GAATAAACAT GCAAAAAAGA TGGTGCTAGA 
    CAAAGGAGCA CAGGATGTCA TGGTGTCTGA TTCTACAGCA TCAGATTACG 
    ACAGCATGGA TGCAGGAAGT TCTTGGAGTT TATCAGATGG AGATGATGTT 
    GAATCCTTTT CGGACGCTGA GATTTTCAGA TATTGTTTAG ATGGTACACA 
    TGAGCGGTCA AAGTTTCTCA GAGCTGCAGC TCCTTCTGTT AACGAAGATG 
    ACTTGATAAA ACTTGCAAAT CAGGTCTCTT TGTATAGTGG ATGCACCCAT 
    CACAGAAACC AAATATTAAT ATCAAAGCAA CTGCTCCAAG AGGGTGCTGA 
    CATTTGGAGT ATAATCTCAA AGAACAATGA ACGTGCTCTT TGGTCATCTG 
    CAGTTCCTGA AATGAAAGCA AAATTTTTGG AAATAGTCCA TCCTTCCAAC 
    AGGGGTTTGT CGGAGCAGGA TTTTGAGGTT TTAAGAGGAA TTGCTGGTTG 
    TGGTGATGAC ATTGGAAGAG ACGAGTTTGA TAAGCTATGG TCCTGGTTAT 
    ACCCAGTTGC CATTGCTTTG TCAAAAGACA AAATAAACAG GCTATGGGAT 
    TTCACAGCAC ATAGATGGAT AGAGGGATTG ATTACATTAC AGGAAACTGA 
    GAATGCGCTA AGAAGTTCCA GGGACCGGCT TATGAAGCCA GGAACATTTG 
    TCCTTAGATT TCCTACTACC CGAAGCTGGC CACATCCAGA TGCCGGTAGC 
    CTGGTTGTTA CCTATGTTGG CTCCGATAAC TCAATTCATC ATAGACTTTT 
    GCCTCTTGAT GTCAGTGATG CTAAGTCTGG CAACCTAGAA GATTTGTTGC 
    TGAAGGAGCC TGAATTGTCC CAGCTAGGAA GGGTTGATCG CCTGCCATCC 
    TCTATGCAGA GCTAAGAAAA GAAATGGATT GTGGTCTCAT ATATGAGAGC 
    CAACACCAGC AACTCGAAGG TCACTACTAA CCAGAACTCT GAATACAACA 
    ACCAGTTGCA TGTTGGTGAA CCTTTTTAGG CTGTAGCCAT GTACAGTTTG 
    TATGTAAATC TAGCGCTTTA GGGGAATAGA TGATAGATAA TATAGGCTAG 
    CAGTGAACAT GTAGCCATGT ACATTATAGT TGTATTGGGT CTGGTGCCTT 
    TGCTGGGGTT TTGCCTCTCT CACCAGTCTC ATCCGAAATT TTAGTTC

    Gene models with high sequence identity

    1. AT1G78540.1 [+] show detail - SH2 domain protein B
      E-value: 7e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan SH2 motif 9.707
    superfamily SH2 domain 4.2e-07

    See the detailed result >

    AT1G78540.1

    Model type
    Protein coding
    Short Description
    SH2 domain protein B
    Curator Summary
    Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
    Computational Description
    SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1); Has 144 Blast hits to 142 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR