K24231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24231

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24231

Determination of introduced cDNA(s)

  • J033150D12 - Rice Full-length cDNAs - Original: J033150D12

    full reading [+] show sequence

    Nucleotide sequence: J033150D12 - full reading 
    GTTTGGTCGC GTGGCTTGAG CGGTGGTGAC ACCGCTCGCC TCCGTCCGCC 
    TCGCCTCCAC CGAGAGGTTC TCTCTGCCGC CGATTCAGAT TTACAGGGAG 
    ATTATCTTGT GATCTGTAAA CATGTTTGGG CGTGTACCGA GGAGTAACAA 
    CACCAAGTAC TATGAGGTTC TTGGAGTTCC TAAAACTGCA AGCAAGGATG 
    AGCTAAAGAA GGCATACCGG AAGGCTGCCA TAAAAAACCA TCCTGACAAG 
    GGAGGGGATC CAGAAAAGTT TAAAGAATTA TCACAAGCGT ATGAGGTTCT 
    CACTGATCCT GAGAAGAGAG ACATATATGA CCAATATGGG GAGGATGCTC 
    TTAAGGATGG AATGGGAGGA GGCAGTGACT TCCATAATCC ATTTGACATA 
    TTTGAGCAGT TTTTCGGGGG TGGTGCCTTT GGGGGGAGTA GCTCAAGAGT 
    ACGCAGACAG AGACGTGGTG AAGATGTGGC GCATACTTTG AAGGTGTCTT 
    TAGAAGATGT GTATAATGGA TCTATGAAGA AACTATCATT ATCACGAAAT 
    ATTCTGTGCC CAAAGTGCAA AGGAAAAGGC CACCCACGTC GCGCTCCAGC 
    AGCAGCTCAT CGCGGCCCAG CACGAGCTCC GGGTGGTGTC CATCGCCGCC 
    ACGAGGGCGC GTGCCGAGCG CGAGGATGAG GTCCGCGCCC TTGCGGAGCA 
    GGCCGCGCGC ATAGAGGCCG AGGCTCGGGC CGCCGTCGCC GCGCGCGCGG 
    AGGTCGACCA GGTCCACGCG GACGTTCAGG TGCTCGCCGG CGCGCGCACT 
    GAACTCGTGG ACCGGTTGCA GGACCTCCGC GGGCAGCTCG CGCGCTTCCA 
    GGCCGAGGCG GGTAAGACTG AGTCCGTCCG TGCCCAGGTT GAAACCATGC 
    GCCGGGAGAT CCAGAAGGGC AGGGCTGCGG TTGAATTTGA AAAGAAGGCA 
    CATGCTGATA ACCTTGAACA AAGTAAAGCA ATGGAGAAAA ATATGATTGC 
    TGTAGCCAGT GAGATTGAGA AGCTAAGAGG AGATCTTGCA AATGCTGAAA 
    AGCGGGCCAC TGCTGTCACC GCAACAGCAC CTGTAGCTAA TCCTGGGTTC 
    CCTACAACAT ATGGCAATTC TGAGGCAACA TATCCAGCAC CTGCAGCATA 
    TGGTAACTCT GAGACAACAT ATGCACCAAC GTATGGTAAT ACTGAGGCAG 
    CATATGCATC AACATATGGA AGTTCTGAGG CAGCATATGC AGCAGCATAT 
    GGAAATTCTG ATGCTTATAG CACTAATCAG GCTCATACCC GCACCGATGG 
    CAATCCTCAT TACATGGCTC CACCTGTTCA TTATGCGCAG TATGACAGCC 
    AGCACACCAA TGTGCAAAGG TGAATGATGA GTCAGGGTAG CTTTGACCTT 
    GGGTGTAATC CTGGCATTTG TCAATGTAGT TGCTGGGTTC ACCAAATTTA 
    AGGTTATCTG CAGGAATTCA TTCCATGGAA GTGATGGATA CACTGTTTTT 
    CCCCTATCTT TTCATTAACC AGTTCCGGAA TGCTCGAGCC AGTTGCCTGA 
    AGTCAAAATC TTTCTGCAAA TTGTCGATGT ATCACCCTGA TGAACCATGG 
    ATTAGTGAGA CCGCAGCTCA GTCTTTTTAG TCAGGGATTG TGATTATTCG 
    CAAATGTAGT GCTGCAGCAT TTTCCTTTGT AAATATATAG TGGATAATGG 
    TCCAATGGTA ACAAGCCGTT CTCATGCATG ATGCGTTACA TTTTGTTTGC 
    CT

    Gene models with high sequence identity

    1. AT3G44110.2 [+] show detail - DNAJ homologue 3
      E-value: 6e-55; Score: 212.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Heat shock protein DnaJ, N-terminal 2.3e-22
    Gene3D no description 7.2e-06
    ProfileScan Heat shock protein DnaJ, N-terminal 23.567
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    FPrintScan Heat shock protein DnaJ 4.6e-21
    FPrintScan Heat shock protein DnaJ 4.6e-21
    FPrintScan Heat shock protein DnaJ 4.6e-21
    HMMPanther HSP40, SUBFAMILY A, MEMBERS 1,2,4 7.5e-78
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 7.5e-78
    HMMPfam Heat shock protein DnaJ, N-terminal 7.2e-26
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMSmart Heat shock protein DnaJ, N-terminal 1.4e-27
    superfamily Heat shock protein DnaJ, N-terminal 6.2e-37

    See the detailed result >

    AT3G44110.2

    Model type
    Protein coding
    Short Description
    DNAJ homologue 3
    Curator Summary
    homologous to the co-chaperon DNAJ protein from E coli
    Computational Description
    DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26521 Blast hits to 26345 proteins in 3465 species: Archae - 213; Bacteria - 10015; Metazoa - 4280; Fungi - 2432; Plants - 2547; Viruses - 88; Other Eukaryotes - 6946 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR