K24604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24604

Determination of introduced cDNA(s)

  • J013098F12 - Rice Full-length cDNAs - Original: J013098F12

    full reading [+] show sequence

    Nucleotide sequence: J013098F12 - full reading 
    TCAAGTTTCG TTGGTTTGGA ATTCAAGGGA TGAGCGATCC AAAAATGCAG 
    AGAAGTTGAG CTTGTTGTCA GAATTCTTAT GGAGAAATGG GGGACCAAGA 
    AGTAATGTTC ATCTGATTCA CTCTATATGG GCTAATTTTC AGACATCAAC 
    CAGCAATATA ATTTTTGGGC ATAAATGGAG ACATCTCATT GGGGAGAACG 
    ACTTATGGGA GCGTTATGGT GGAGTTGATA TTTCTCTGGA TCCTTATAGC 
    TTTGGGCAGG CTAATACTTT GTCTTTTAAT GCGTTACTGC ATACGTTGCA 
    CAAATATGTA CCACGTGGGT CAACAGTTGT TGACCTGTAT TCTGGTGCTG 
    GTGTTATTGG ATTATCTCTT GCTGCTTCGA AGAAATGTAG GTCTGTGAAA 
    TGTGTTGAGA TTAACAAATT GTCAAAAATG TCTTTTGAAA AATCAGCAAG 
    CCGACTTCCC CCAAACCTGG GTTGTACCAT AACTTGGCAC AACACTGATG 
    CTTCAGTTGA ACCTGTTCAT TGGCTCGAAG GGTCAAGTGT TGTTATTGTG 
    GATCCACCCA GGAAAGGATT GCACCCCTCT GTTATCTGTG CTTTACAGAA 
    AGTTGCTTTG TCCGAACGCA AGGCATATAA GGCGAAAAGT ACACTTACAA 
    AGGTCAAAGA TGAGAAGAGG CCATGGATCC TAAGAGCAAG AGAGGCAGCT 
    GTTCAGGTTG ATAGTACACC ATTGGAAGGA AGTAGTGAAA CGTGGCCAGA 
    AACTCTTATA TACATTAGCT GCGGATGGGA CAGTTTTAAG AAGGACTGCA 
    AAAGCTTGAT GTCCAGTAAG GCTTGGCATT TGCAGAATGC TCATGCTTTT 
    AATTTCTTCC CTGGCACTGA TAGCATCGAA GTGCTGGCAA TCTTCAAACG 
    AGAATCGGAA GCAGTTCAAA AGAAAAAGAA GAAAGCTAAG AAGAAGAAAG 
    CCAAGTAGAC ACCCGAAAAG CTAACCTTAC AGAAACAATT TTGCTAGATC 
    TGGAAGGCTG GAAGTGACAA GATCTGGTAT ACGTTTACCT GTGTAATTAA 
    CGTGGGTCCT GAAGAATTTA ACACCCTCCA ACCAGGCATC AATTTAATAC 
    CCGGAAGATT CATGTAATTC AAAGAACTTG CCCAATTATC TGGTTTAGTT 
    TGTCCC

    Gene models with high sequence identity

    1. AT3G27180.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 5e-115; Score: 411.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Emb|CAB12631.1 4.2e-96
    HMMPanther RNA M5U METHYLTRANSFERASE FAMILY 4.2e-96
    Coil coiled-coil 0
    superfamily S-adenosyl-L-methionine-dependent methyltrans 6e-14
    HMMPfam Methyltransferase small 1.1e-05
    HMMPfam Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit 1.3e-05

    See the detailed result >

    AT3G27180.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4717 Blast hits to 4707 proteins in 1568 species: Archae - 39; Bacteria - 4296; Metazoa - 92; Fungi - 26; Plants - 68; Viruses - 1; Other Eukaryotes - 195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR