K24644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24644

Determination of introduced cDNA(s)

J033069O17 - Rice Full-length cDNAs - Original: J033069O17

full reading [+] show sequence

GAATCCCAAT CTCCTCCCCC CTTCCTTCCT CGGCCAGAGA AAAAAAAAAG 
AGAAAAAAGA GGAGAGGCCT CGCAACTGCA AACCCTCGCT TTCTCCGATC 
GAATTGCTCG CCCGAGCACC ACCAGTTCGC CGCCCTTCCC ACCACCAGTC 
GCCTCCCTCC CCCGCGCAGG GTATCTCCTC CGGCCGCCCC AGTGGCGATT 
CCCCCCGAGC TCCCCCGCGC GGCGCCGTGG CCATGTCGCT CACCTGAGGA 
TACGGTCGGT GGGCTGTTTC TTGCAAGAGT CTCTCCCCCG AGCCCCCCAA 
GAGAAACAGC CCGGGGGACG CCGAGTTGTT GATTCGATCG CCGGAGTTGC 
GCCGAGGTGA ACCTGTTTTT TGTTTTTGGT GGTGGTTCCG TCTCGGTTAA 
TCTGCTTTAA CTTGGAGGCA AAGGCTCGGT CTTCGTCTGA GGAACGCGGG 
GGAGCGGTGG TAGCGTCGCG TGCACGGGTC CTCCTCGAGG TCGGCTTGAT 
GCGGAGCGGC GCGCAGGCTC CTCGAGGCGG CGGAGGCGGC GGGGCCTTCT 
CGAAGCGGAC GCTGTCCGGC TACATGAGGA TCATGTCGTC GGGGGCGTCC 
ACGGCCGCGT CAAGCCTGCT GTCGGTGGGC GCGTCGCTGG TGAACTCGAT 
CGCCAGCCAC GACGAGGATG GGAGCCGTGA CCAGGTACAA TGGGCTGGAT 
TTGATAAACT TGAATGTGGG GGTGACATGC TGCGACAGGT TTTACTTCTA 
GCTTACAGAT CTGGTTTCCA AGTATGGGAT GTTGAACATG CTAATGATGT 
AAGACAGCTA GAATCCAGAC ATGATGGTAC AGTTTCTTTC ATGCAACTCC 
TAAAGAAACC AATTGCCTCT ACAAACAGTG AAGACAAATT TGCAGATGAA 
CGGCCACTGT TAGCTCTTGC TTGTGACGGA ACTAGCACAG GAAGTCTAAT 
CAGCAATGAT GGCAATGGCC CTGTTCCCAA TGGAGCCAAT GGTACTCTCC 
ATAATATTGG CCATGAGAAT CATCCTACTG TACTTCGGTT TTATTCATTA 
AGGGTCCATG ATTACGTGCA TACAATAAAG TTCAGATCAA CTGTTTATTC 
CATACGGTGC AGTTCTAGAG TTGTAGCTGT ATCTCAGGCT AATCAGATAC 
ATTGTTTTGA TGCTGCAACA CTGGAGAGAG AATACACAAT CCTTACCAGT 
CATATAGTTC CACCAATTTC AAGTTATGGA CCACTTGCAC TGGGTCCTAG 
ATGGATTGCA TATTCTGGGA ATCCAGTCCC AGTTCCGGAT ACAGGCCGTG 
TTACCCCTCA GCTTCTTAAT CTATCTCCCC TAGTTCCACA ACCTGGTTCA 
AATGGCAGTG TTGTGGCATA CTATGCAAAA GAATCAAGCA AGCAACTGGC 
TTCTGGCATT ATAACACTTG GTGATGTTGG ATATAAGAAG TTGTCCAAGT 
ATTGTTCAGA CTTAATTCCA AGTAGTAACA ATGTTATAAA CCAAAGGAAT 
TCTGGCTTCA AAGCAAATGG GGCAACAATA AACGGGCATA CAGACAGCGA 
ATATGCTGGA ATGGTTATTG TTCGAGATAT TGTCTCTAAA TCAATGGTGG 
TTCAGTTCAG GGCACATACT AGCCCCATTT CAGCACTCTG TTTTGATCCC 
AGTGGAACTT TGTTGGTGAC AGCTTCAATT CACGGTCGAA ATATCAATGT 
TTTCCGCATT CTGCCTTCTT CGCATGGGAG TTCATCAGAA GCTGGTCCAA 
ATGGAACCTG TGTTCATCTG TACAAATTGC AAAGAGGCAT CACCAATGCG 
GTCATAAAAG ATATCAGTTT TAGTGACGAC AGTGAATGGA TAATGATTAG 
CTCTTCAAGG GGAACTAGTC ATTTCTTTGC AATATCTCCA TATTGTGGAT 
CAACAAGCTT TCACTACAAC GAAAACAATC TTGCAGAAAA TAGTTATGCG 
GTGGATTCAT CAGTTAATCA TACTGCCCAT TGGTCCCAAA ACTCAGCTCC 
CTCTCTGAGT CTCAATCAGA AGATACTCTC TGTTACGGGC CCCCCTGTAA 
CATTGTCTGT TGTTAGTAGA ATAAGAAATG GAGGCAACCT GTTGAAGGGC 
GCTGTTCATG GTGCTGCAGC ATTTGCAACA GGTGTTTCCA GTCCAATTTC 
TGGTGCTATT GCTTCAACAT TTCACAATTG CAAGGGTGCC GTCAAAAACT 
CAGATGGAAG TTCGCCTTGC ATGAAGTATC ATTTACTAGT ATTTTCTCCA 
TCTGGAAGCA TCATTCAGTA TGTTCTCCAT CGCTCTGCAG AGCAGGATCC 
TGGAATTGAT TTTCCCTCGA GTGCCATTCC TTATGGATCA CAAAGAGAAA 
CTGACACTAG GTTTATTATT GAGGCTCTTC AAAAGTGGGA TGTTTGTCAT 
AAAAGAAATC GAAGAGACGC TGCTGAGAGT TTTGTATATA GTGATTTTGA 
CATCGGAGAA AACAGTAAAC TTTTTCAGAA AGTGGCAAAG AAAGGAACTA 
GTGTTTATCC ATCCAATGGC ACTGCTGTTG AAAAGCAGAA GCTAGGTGAT 
GAGAATCATA ATTTTTATAT TTCTGAGAGT GAATTGCAGA CTCATGTTGT 
TCCAACACCA CTCTGGTCAA GATCTGGGAT GCATTTTCAA GTAATGGGGG 
ATGGAGCTCT AGAAGCAGAC AATACTGGTA TAATTTCAGG TGAACTTGAA 
ATAGAAAAGC TCCAGACTCG CAATATTGAA TCTAGGTCAA AGAATCTTAT 
ACCAGTATTT GAATCTCTTC ATACATCCAG GTTTCAACAG TCAAGGGTGA 
GCACACCTGA TAGTAACAAA TATGGATTGC TTCAGCGTCA AAAGTCCGGA 
TTTTCAGAGG ACGGTAGACT CTCCTGCAGA AGCAGTTCTA GCTCTTTGGA 
CTGCATGTCT GAAGGCCCAA TTAGCACTGA TGATAATGGT TTTGGTCAAT 
GTTTAGTAGA AGATAGTGGT GGTGCTGTAA ATAAGAACCC AAATGTTAAC 
CCCCGTTCCG AGCTTGTAAA TAATACTCAG AGCCTTAACA CAGAGGCCCA 
GCTCGGATTT GTAAATAACA AAGAGGATTG TGAAGACAGA GAGCAACTCC 
CAGATTTGTG ATAGCAACTG TGATCAAAGA CGATCACTGG TGATGGAGGA 
GCTTCTTGAA TCGCAAGTCT TCATTGTGCG TGTGTAGCTG CTATTCTTTC 
ATTTCTCCTC CTGGAGTTCT TGACCTCTCT TCTATAGCTC TATTTATAAG 
CATTCATGAT AAATTTACTG ATAAAAAAAT GAAGGGGAGG TCGAATTAAG 
GCCCAATGGG TATGGGAGCG GTGGTGCTGT GAAGTTGGGT TTCCATCTTA 
CAAAAGAACG TGCACATAAC AAGATTGTTC ATTGCATTTT CAATAATAGC 
TCTTAATTTG TG

Gene models with high sequence identity

AT5G54730.1 [+] show detail - homolog of yeast autophagy 18 (ATG18) F
E-value: 3e-124; Score: 443.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	3.8e-67
HMMSmart	WD40 repeat	210
HMMSmart	WD40 repeat	0.0006
HMMSmart	WD40 repeat	64
Gene3D	WD40/YVTN repeat-like-containing domain	1.8e-06
HMMPfam	Breast carcinoma amplified sequence 3	1.2e-62
HMMPfam	WD40 repeat, subgroup	5.7e-05
superfamily	WD40 repeat-like-containing domain	5.5e-13

See the detailed result >

AT5G54730.1

Model type: Protein coding
Short Description: homolog of yeast autophagy 18 (ATG18) F
Computational Description: homolog of yeast autophagy 18 (ATG18) F (G18F); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR