K24705

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K24705

Determination of introduced cDNA(s)

  • J033024M21 - Rice Full-length cDNAs - Original: J033024M21

    full reading [+] show sequence

    Nucleotide sequence: J033024M21 - full reading 
    TGGGGATTAC AGTTAAACCA GTCTCCTCGT CTTCTCTCCT CCCCTCCCGC 
    TTGGAGCTTT CCGCTGCTCA AACCCCCGCC GCGCCAACCT AGGGCATGCT 
    CCCAACCCCC ATGGCCCTAG CCCTAGCCCT AGCCCTATCC CCCTCCTCCT 
    CCTCGCCATG ACCGCCCTCG CCTCCCCCTT CCTCCTCCCC CACCGCCGCC 
    GGAAGCGCCC CCTCGACGAT TCCCACTTCC ACGGCCCGCA GCGCCACCGC 
    CGCCGCCGCC TCTGCCTCTG CCCGGCGGCC TTCCCCTCCC CGCCGATCCC 
    GCCCGAGGCG GCGTCGTCCC CCGCGTTCGA CATGGGGGGC TTCCTCTCCT 
    TCCTCCGGGG TAAACCTAGG CACGACGATG CCGGCCTCGG GGTGTACAGG 
    GGCTGGGTCG ACGTCCGGTC GCGGGATCTC TCGGTGGCCA CCGCCATGGA 
    AGACGACGAC GCGGGGTTTG GCCCCCGGTT GGTGGTGAGG CGGAGGGTCG 
    GGGACCCGAG GAAGGCCGCC CTGGAGGCCG CGGCGCCGCG TCCGCGGGTG 
    AAGAGGGAGC CGTACTACAA GGAGGCGCTC GAGAGGATGA GGAGCCACGA 
    CAAGAGGCTG GGCGAGCTCG CTTCACTGGT GAATCTAGAA GAGGAGAAAC 
    TCGCCGAGCT GCGGAAGGCG GCTGAGCCAC CCAAGGAGGA CCTGTCTGAA 
    CTCTTTACAC CTCTAACTGC TGAAGAGGAA AATGAAGTTC ATAATTGTTT 
    GTTTGGTAGG GGTTCAAGTA CTGAAATCCT AGCACTGCAT GAGCCCTCCA 
    ACATTGAAGT TAGCAGAGAG AAGTTCCGGT GCTTGAGACT GACTGCCTGG 
    TTAAATGATG AGGTCATTAA TTTGTACCTT GAATTATTGA AGGAGAGAGA 
    GGCAAGAGAA CCAAAAAGGT TTTTGAAATG CCATTTCTTT AATACATTTT 
    TTTATAAGAA GCTTGCTTGC GGAAAAAATG GCTATGACTA CAAATCTGTT 
    AAAAGATGGA CTACCCGCAG GAGGTTGGGT TATGAGCTTA TTGAGTGTGA 
    TAAAATCTTT GTCCCTGTAC ATAAAGATGT CCATTGGTGC TTAGCAGTTA 
    TAAACATGAA AGAAAGGACA TTCCAATACC TTGATTCTCT TGGTTGTGTG 
    GATCATCATG TACCAAGAGT GCTGGCTAGA TATATTGCAG AGGAAGTGAA 
    GGACAAGAGT AATAAAGAGA TCGACACAAA CACTTGGCAC GAAGAGTTAG 
    TTGATGATAT TCCTTTGCAG CAAAATGGGT GGGACTGTGG TATGTTTATG 
    CTCAAGTACA TTGATTTCCA CAGCAGAGGA TTGAGCATGT CTTTTAGTCA 
    GGAAAACATG GAATATTTCA GAAAGAGAAC AGTGATGGAA ATCTTAAGAT 
    TAAGAGCTGA CTAATCAAAT ATGGATCCTT TTCCTTTTGG TGAACAGCTG 
    ATTAACTTAG GTTGATATTC GTAGACTAAA TTGTCAATCG TGTATACATT 
    GTTGGAAGTT GCCGGCAAAG ATAGGAAATA TATTTTTCCA GTGAGAAGCT 
    GGAGTTTTGT CAGTATGTAA ACCTGTATGT TGATAACACC AGATTTCTGT 
    AAAGTTCCGT TGTTTTTGGT G

    Gene models with high sequence identity

    1. AT4G15880.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 2e-82; Score: 303.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cysteine proteinases 2.4e-62
    HMMPfam Peptidase C48, SUMO/Sentrin/Ubl1 4.7e-40
    Coil coiled-coil 0
    HMMPanther SENTRIN/SUMO-SPECIFIC PROTEASE 1.7e-80
    ProfileScan Peptidase C48, SUMO/Sentrin/Ubl1 26.797

    See the detailed result >

    AT4G15880.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Curator Summary
    EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.
    Computational Description
    EARLY IN SHORT DAYS 4 (ESD4); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: UB-like protease 1A (TAIR:AT3G06910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR