K25136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25136

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25136

Determination of introduced cDNA(s)

  • J013048E04 - Rice Full-length cDNAs - Original: J013048E04

    full reading [+] show sequence

    Nucleotide sequence: J013048E04 - full reading 
    GACAGAAGAG AGACAGGGGA GAAAACCCTA ATCTCAAGGC CGCGGCTGTG 
    AGCGCTCCTC CCGTCTCTCC CCCAACCCGC CGCCAGCCAC CGAGCTCGCC 
    ACCGTCTCCG TTGCCTCGCC GTGCTCTAGG TTCTCGGATG GAGGCCGAGG 
    CGGCGGCGAA GAGGGCGCGG GAGAGCGGTG ACGCGGCGGC GGCCGGTGCC 
    GGCGAGCAGG CGGGTATCTC TGCCGTCATC CCTGGATGGT TCTCCGAGAT 
    TAGCCCCATG TGGCCTGGTG AGGCACACTC ATTGAAGGTC GAAAAGGTAC 
    TATTCCAAGG AAAGTCGGAC TACCAAAATG TGATGGTGTT TCAGTCCTCC 
    ACGTACGGCA AGGTGCTTGT GCTGGATGGA GTGATTCAGG TCACTGAGAG 
    GGATGAGTGT GCTTACCAAG AGATGATTAC CCACCTCCCC CTTTGCTCTA 
    TCAAAGATCC CAAGAAGGTG TTAGTTATTG GAGGTGGAGA TGGTGGTGTT 
    TTGCGTGAAG TTTCACGACA TTCCTCGGTG GAGCAAATTG ACATATGTGA 
    AATTGATAAG ATGGTGGTAG ATGTCTCCAA ACAATTTTTT CCTCATCTGG 
    CTGTTGGATT TGAAGACCCC CGTGTGTCAT TACACATTGG AGATGGCGTG 
    GCCTTTTTGA AAAATGCTCC AGAGGGTACT TATGATGCAG TTATTGTGGA 
    TTCCTCTGAT CCAATAGGAC CGGCTCAAGA GCTTTTCGAG AAGCCTTTCT 
    TCCAGTCAGT TGCCAGAGCT TTGCGTCCTG GTGGTGTTGT ATGTACCCAG 
    GCAGAGAGCA TATGGTTGCA TATGCATATT ATTGAAGATA TTGTAGCTAA 
    TTGTCGCCAA GTTTTTAAAG GCTCAGTGAA TTATGCTTGG ACAACAGTAC 
    CAACATACCC TAGTGGTGTT ATTGGTTTTA TGCTTTGCTC CACCGAGGGG 
    CCTACTGTTG ATTTCCAGCA TCCTATTTTT AACATTGAGG ATAATGAGTT 
    CTCAACAAAA TCGAAAGGAC CACTTAAGTT CTACAATTCC GAGATCCACT 
    CAGCATCATT TTGTTTGCCG TCTTTTGCGA AGAGAGTCAT TGGATCCAAG 
    GCCAACTAGA TCAAAGATCA CTGAGCCCAA GGCCAACTGG ACTGGAATCC 
    CTCCGACAAG AGATTTGGTT GTAGCAGAAA GAGCAATGAC CCCTTTTTTC 
    CCATTTAAAT AAAAATTGGA GATGTAAACG GTTATCCAAG TGCTTTTGAA 
    TTTTGTCTCA GTATGAGAAC GTTTTGTATT TGGTAACTGT TTTCCCGCAT 
    CTCCCTTACC ATTTACCAAA ATGAGTATTG CTGTAGTTTT CATCTG

    Gene models with high sequence identity

    1. AT1G23820.1 [+] show detail - spermidine synthase 1
      E-value: 9e-145; Score: 510.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Spermine synthase 2.7e-98
    superfamily S-adenosyl-L-methionine-dependent methyltrans 7e-88
    HMMTigr Spermine synthase 2.5e-122
    Gene3D no description 7.3e-10
    Gene3D no description 2.1e-81
    HAMAP SPEE_MF_00198 32.112
    PatternScan Spermine synthase 0
    ProfileScan Spermine synthase 105.815
    HMMPanther SPERMIDINE SYNTHASE 1e-200
    HMMPanther Spermine synthase 1e-200

    See the detailed result >

    AT1G23820.1

    Model type
    Protein coding
    Short Description
    spermidine synthase 1
    Curator Summary
    Spermidine synthase.
    Computational Description
    spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5258 Blast hits to 5255 proteins in 1502 species: Archae - 169; Bacteria - 2896; Metazoa - 353; Fungi - 199; Plants - 416; Viruses - 0; Other Eukaryotes - 1225 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR