K25240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K25240

Determination of introduced cDNA(s)

  • J013002D01 - Rice Full-length cDNAs - Original: J013002D01

    full reading [+] show sequence

    Nucleotide sequence: J013002D01 - full reading 
    GGTGGATGCA GAGTAGCTGG GGGCAAAGAA AAAAAAACAT TTAATTCTTG 
    CAATCCTAGC TAGTAATATA TATTCGAGTC GAATTGTTTG TTTGTTTGTT 
    TGTTGCTAGG TTTGTCTGGG GGTTTGGTTA GTTATAAAAA GAGAGCTAGC 
    AATTCTCCAC ATTTCTCTCC CGGTTCCTCC GCTGCAACCG TTCTCTTGCT 
    TCAATTCTCG ATTCGCCATG CATGCAAGAG TCTGCTGAAC GCCGATTGAT 
    TAATTGTCTT GTAGTATCTA GGAAAGTAAT CCGCTGCTGT ATCCTCCTCC 
    TATCTGGATT CTGGAGTGAT CCCTGCCCGC TGGCTCCATC CCGCCGCTGC 
    CGACACACAT AATTAAACAG CTACTAGTTG ATCGATATTA TTTCTTCTCT 
    TCTCTTGGGG TCATCCCTCT CAAATCAAGC TCTACTACTC TACATACTCT 
    CTATCGGGTG CCGGCACTGC AGTCCCCCAG GTGAGTGAGT GAGTGAGTGG 
    AGTGCGGTGG CAGAGAGCTA GCTAGGCATG AAGTACAGCA AGGAAGCAAA 
    GCCCGAGAGG GCGGCGGGAG GGCGGTCGAG AGCCGTGCCG GTGGCGCTCC 
    TGTTGGTCGT GCTCTGCGCC TTCTCCTTCT ACCTCGGCGG GATCTACAGC 
    ACCGGCCGCA GCTTGCTCGA TGTCAATGGC ATCGTCGTCA AGGGGGCCTC 
    TTCTTCCTCC TCTGCCTCTG CCGTTGCCAT TCAAAAGGAC ACCAACACCA 
    AAGCCGTCGT CGTCTTCCCA GAGTGCCCCG CCGACTACCA GGACTACACT 
    CCCTGCACCG ATCCCAAGCG TTGGCGCAAG TATGGCAACT ACCGGCTGAG 
    CTTCATGGAG CGTCACTGCC CACCGGCGGT GGAGCGCAAG GAGTGCCTGG 
    TGCCGCCGCC GCAGGGGTAC AAGGCGCCCA TCCGGTGGCC CAAGAGCAAG 
    GACCAGTGCT GGTACAGGAA CGTCCCCTAC GACTGGATCA ACAGCCAGAA 
    GTCCAACCAG CACTGGCTCC GCAAGGAAGG CGACAAGTTC ATCTTCCCCG 
    GCGGCGGCAC CATGTTCCCC AACGGCGTCG GAGCCTACGC AGACCTCATG 
    GCGGAGCTCA TCCCGGGCAT GACGGACGGC ACGGTGCGCA CGGCGCTGGA 
    CACGGGATGC GGCGTAGCCA GCTGGGGAGG CGACCTGCTG GGGCGCGGGC 
    GGGGCATCCT GACGCTGTCG CTGGCGCCCA GGGACAACCA CGAGGCGCAG 
    GTGCAGTTCG CGCTGGAGCG GGGCATCCCG GCCATCCTGG GGATCATCTC 
    CACGCAGCGC CTGCCCTTCC CGTCCGCGGC ATTCGACATG GCGCACTGCT 
    CCAGGTGCCT CATCCCGTGG ACAGAGTTCG GCGGCCTCTA CCTGCTGGAG 
    GTGCACCGCG TGCTCCGCCC CGGGGGCTTC TGGGCGCTCT CCGGCCCGCC 
    CGTCAACTAC GAGAACCGCT GGCACGGCTG GAACACCACC GCCGCCGCGC 
    AGAAGGCCGA CCTCGACCGC CTCAAGAAGA CGCTCGCCTC CATGTGCTTC 
    AAGCCCTACA GCAAGAAGGG GGACATCGCC GTGTGGCAGA AGTCCACCGA 
    CCCTGCCTGC TACGACAAGC TCACGCCGGT CTCCTCCCCT CCCAAGTGCG 
    ACGACAGCGT CGACCCGGAC GCCGCCTGGT ACGTGCCCAT GCGCTCCTGC 
    CTCACCTCGC CTTCTTCCAC TTCCTCGCGC TACAAGAAGC TGGCGCTCGA 
    CGCCACCCCC AAGTGGCCGC AGCGCCTCGC CGTCGCCCCA GAGCGCATCG 
    CCACCGTCCC CGGGAGCAGT GCCGCCGCCT TCAAGCACGA CGATGGCAAG 
    TGGAAGCTCC GGACCAAGCA CTACAAGGCT CTGCTCCCGG CGCTGGGGAG 
    CGACAAGATC AGGAACGTGA TGGACATGAA CACCGTCTAC GGAGGCTTCG 
    CCACCAGCCT CATCAAGGAC CCCGTCTGGG TCATGAACGT CGTCTCCTCC 
    TACGGACCCA ACTCCCTCGG CGTCGTCTTC GACAGAGGCC TCATCGGCAC 
    CAACCACGAC TGGTGTGAGG CATTCTCTAC ATACCCCAGG ACGTACGATC 
    TATTGCATCT TGATGGCTTG TTTACTGCAG AGTCTCATAG GTGCGAGATG 
    AAGTTTGTAC TTCTTGAGAT GGACCGTATC CTTCGTCCCA CTGGTTATGC 
    CATAATCCGC GAGAACGCCT ACTTTCTGGA TTCTGTAGCC ACCATTGCCA 
    AAGGAATGAG ATGGAACTGT GACAAGCATG ACACCGAACA CAAGGCAGAC 
    AAGGAGAAGG TCCTCATCTG CCAGAAAAAG CTTTGGTCAG GAAAGAACAC 
    CCAGCATTGA AAAAAAAAAT CAATAACTTG ATAGCCTCAC CTTGATCGAA 
    CCTGGAGGGA TCACAATGTA AATCTGCTCA ACGATTTCAA GACAGTGCTC 
    AACCTAAGGC ACTTCACCCT CCCACTAGAC TTCACACTCT GATACAAGAA 
    CGTTCGTATA ATGATTAAAT TAAATAAAAT GAGCAATACT CCAATATAGG 
    ATCCAATACT TCCTACTCTC TGCCAGTTAT CACACAATTA TTTTTTACAG 
    TTACTAGGGG ACCAATTAAT TAATACCACC AAGAGGCAGC TGTAAGTTAT 
    TACTTTTTTT TAGAATGGAC AACTGTAAGT TACTTTTATA CTACTATATA 
    GAATGTTCAT TTGTATTAGC CATAGCTTGT TTCTACGATT GTAACAATAG 
    GAACGGCTAT ATATTTATTT TAATTGAATG TTTACAGGAG C

    Gene models with high sequence identity

    1. AT4G19120.2 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 845.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 3.2e-203
    Gene3D no description 5.1e-06
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.1e-31
    superfamily S-adenosyl-L-methionine-dependent methyltrans 5.2e-09

    See the detailed result >

    AT4G19120.2

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    early-responsive to dehydration 3 (ERD3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G31850.2); Has 1146 Blast hits to 1130 proteins in 105 species: Archae - 6; Bacteria - 157; Metazoa - 0; Fungi - 3; Plants - 960; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR