K25422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25422

Determination of introduced cDNA(s)

  • J023019G14 - Rice Full-length cDNAs - Original: J023019G14

    full reading [+] show sequence

    Nucleotide sequence: J023019G14 - full reading 
    GATTAGTTTG TAACCAAGCT TAAACCCGTT AAAGATAAGG GTTTGGAACA 
    GGTGACCTAG TCCGGTGTAG TGTGTCCAAG AAAGCTGCAG ATCGATGCCA 
    GCGATGTGTG TACTGCAGGG CACGTCGACG GCCGGCGGCT GCAGGTACAG 
    GCAGGCGGTC CCGGCGGGGC GCGGCGGGCG GCTGGACGTC GACACGAACT 
    CCGGCGTGAG GAGGGGGTTC CTGCCGCAGG GGCGGCGGCG GTACAGGCCG 
    GTGACGCAGC CGACGGCGCA GCGGGTGATG GCCGACACGG TGTCGGGGGG 
    GCCCACCACC GTGCTCCTCT TCGGGGCGCA CACCAACCTG GCGCTCCTGC 
    TCATGGCGCA CCCGCGCCTG GCTCGGAACA TCGACCGTGT CTACGTCTCC 
    GGCGGCGCCG TCAGGGCGGC GGACCCCGGC CGGCAACCTG TTCACCGCCT 
    TCGCCACCAA CCCGTTCGCC GAGTTCAACA TCTTTGGAGA CCCCTTCGCT 
    GCTTATCAGG TCATACATTC CGGGATTCCA ATCACGATGA TTCCTCTTGA 
    TGCGACCAAC ACAATTTCGG TCACCGAGGA ATTCGTTTCT GAATTCCAAC 
    AGCATCAGCA AACTTACGAG GCACAGTACT GTTTCCAGTC ACTTGATAAG 
    GTCTTGATGA GGCTGAGGGG ACGATCCAAC GGCCATGGCA ACACGAGCTA 
    CTACATGTGG GATTCCTTTG CTGCTGGTGT GGCTCTCTCT AGCATGCGCA 
    ATGGCGAGGT TGATGGTGAA AATGAATTTT CTGAGCTTGA ATATATGAAC 
    ATTACAGTGA TAACTTCAAA CAAACCGTAT GGTAAACGTG ACGGCTCGAA 
    CCCCTTTTTC GATGGCCGTG CTACTCCTAA ACTTGGCCTG AAAGAGGGTG 
    GAGTTCACAG TGGCCATGTT CAGACTGGAA TAAGAGATAG CTTCTGCCTG 
    GTACCGGGAA GCAACAGAGG GAGATGCGAG GATGGATACA CTAGAGAAGT 
    GTCTGGTCCA GAAGGAGTTC GGGTTCGTGT TGCAACAAGA GCAAAGCCTA 
    ACACGGATAA AAATAGTTCA CTAGAAAAGG AATTTTCCAA GAGCTTCTTA 
    GAGGTCTTAA ATCGTCCCGA ACAAACTGGG CTTTTCAACA TCAATACGCA 
    GTTCCCATAT TATAGAGAAG TTCTTTACAA GCCGGTTTTC AGAAATGTGA 
    GCAGGGGGAA GCCAGTCATT TTTGACATGG ACATGAGCCC TGGAGATTTT 
    GTTTCCCTAA TATACCTCTT GAAGACACCA ATAGAAGTAA TAGATCTAAA 
    GGCTGTTTTG GTCAATGGCA ATGGCTGGGC AAATATTGCG AGCATCGATA 
    TCGTTTACGA CATTCTACAT ATGATGGGCC GCGACGACAT TCCAGTAGGC 
    CTAGGCAATA CCACTGCATT GGGAATTCCA ACCCTTGGCT GCAACAATTC 
    TTATGCTATC CCCCATGGAA GTGGTGGTTT TATTGATTCA GATACACTGT 
    ATGGACTAGC CAGGTCACTG CCAAGAAGTC CTAGAAGATA TGCTCCTGAA 
    AGTTTAGATC ACCCAGAAGA TCGGCAGCCT TTGGCTCTTG AAGTTTGGCA 
    ATCTGTCAGG AAGCAGCTTG ATCCAGGCGA AAAGATCACT GTTCTTACTA 
    ATGGACCTCT CACCAATATG GCCAACATTT CACTCTCTGA CAGGGATGCA 
    AGTTCTGTAA TAGAGAGAGT CTATGTTGTT GGTGGACTCA TCAAAGATGG 
    AGGCGATGAG AATGGAAATT TGTTCACGGT TCCATCAAAC AAACATGCAG 
    AGTTTAACAT ATTTCTTGAT CCACTAGCTG CAAAAACAGT CCTGGAATCT 
    GATCTGAAAA TCGCACTCAT TCCTCTTACG GCGCAACGAA AGGCTGCATC 
    ATTTCGGGCT GTCCTTGCGG CTTTGGAAGA CATCCAGCAT ACCCATGAAT 
    CAAAATTTGT CCATGAATTG TTGTCGTTGC TGCAAGAACT TCAGATCAAA 
    CAGAAGCTGT ATCATCATTT GGACATATTT CTGGGAGAAA TTCTTGGAGC 
    AGTTTACATG GTTGAAGGAT CAGGACTGAA ACCTTCAGTG GAACTCAAGC 
    CAGTAAGTGT TATTGCCAAC ACAAACAAAA GCACGGACGG GCAGATTGTC 
    ATCAGCAAGA ATAGTGCAAA GCTGGTAAGG GTATTGAGCG ATTTCGATGG 
    TGAAATATAT AGCAAACAAT TGGCAAATTC TTTAGCAAAC AAGAGACAGT 
    CTGCCGTTAT TGGGAGTTTT GAAGAACAAA AGGCAATTTG GAGCAGGCCG 
    GTAAATAGTT CAGGGAATAT AAAAAAACAA AAGTGAACTT TTGTAGTAGC 
    ATTAGCGTGC TAAAAAAATA TATTAAAGAT TACATAGCAC AGGTAATAAG 
    AAAGCTGACA TGATAATGCT TGAAGTGGCT GAAGAACGGG TGTCACTGGG 
    TGCTGAAGAA TCGCTCCATG AGTCGCGAAG TAACCTGGAG AATTAATCAT 
    TTATCTTTTT TCTTTTGATT ACACAAAAAG GAAAATTATG TTTCTTTCTG 
    AATTTTGTAC CGTAGTTGAG CATTGATGTG ACCAGCAAAT CTGGGATACG 
    TTTTTCAGTT TGTGCTCTGA ACCACTGAAT CATTCAAGCA GTATAAATAA 
    TTACAGTCTG AAATTATTTA CCTCTGCGGC AAATCAAGCC GTTTTTACC

    Gene models with high sequence identity

    1. AT5G18860.1 [+] show detail - inosine-uridine preferring nucleoside hydrolase family protein
      E-value: 0; Score: 137.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Inosine/uridine-preferring nucleoside hydrolase 1.3e-16
    HMMPanther Inosine/uridine-preferring nucleoside hydrolase 6.1e-06
    HMMPfam Inosine/uridine-preferring nucleoside hydrolase 1.3e-11
    HMMPfam Inosine/uridine-preferring nucleoside hydrolase 1.2e-20
    HMMPfam Inosine/uridine-preferring nucleoside hydrolase 2.1e-41
    superfamily Inosine/uridine-preferring nucleoside hydrolase 4.2e-09
    superfamily Inosine/uridine-preferring nucleoside hydrolase 4.3e-48
    superfamily Inosine/uridine-preferring nucleoside hydrolase 3.3e-22
    Gene3D Inosine/uridine-preferring nucleoside hydrolase 0.00021
    Gene3D Inosine/uridine-preferring nucleoside hydrolase 2.7e-14
    Gene3D Inosine/uridine-preferring nucleoside hydrolase 5.9e-45

    See the detailed result >

    AT5G18860.1

    Model type
    Protein coding
    Short Description
    inosine-uridine preferring nucleoside hydrolase family protein
    Computational Description
    inosine-uridine preferring nucleoside hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: Inosine-uridine preferring nucleoside hydrolase family protein (TAIR:AT5G18890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR