K25539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25539

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25539

Determination of introduced cDNA(s)

  • J013097L08 - Rice Full-length cDNAs - Original: J013097L08

    full reading [+] show sequence

    Nucleotide sequence: J013097L08 - full reading 
    GATATACCAG TTACGTCGTC GTCGTCGTCA TCATGTGCTA TAGCTAGCTC 
    CAAACAAAAC TTGGAGAATT TGGAGCGTAC GTGTACTAGC TAGTATAGAT 
    TGCAGCAGCT AGCTAGCCCA GCAGCAAGAA GACGAGGAGA TAGCTGCAGT 
    CTCGTTTTTG GCTTTTCGAA TTTATTATAA CCCCGGTCGT GCAAATCGAA 
    GAGGATTGGA AGTCAGCTGG TAGACTAGCT AGCGTCCAAG ATACACATAC 
    TACTATCGAA GAGTGTGACT TAATTGGATT GGATTAATTC CATGCCTATC 
    TTCTTCTTCA GCCACAATTT AACAGAACAA GACAATTAGT CTATCAGTGG 
    TTTGAGCTGA TTAACTATCA TCAGAGATAG AGATGGCAGC CGCCTCGTCT 
    GCACACTACT TCGGTCTCGG CGAGCCGCAG ATGCAGCAGC AGCAGCAGCA 
    GCCTCCCCTG CAGAACAACG CGGCTGCTCC GGTCGCGGCC ACGCCGCCGC 
    CCAAGAAGAA GAGGAATCAG CCCGGGAATC CAAATCCTGA TGCGGAGGTG 
    GTGGCGCTGT CGCCGCACAC GCTGCTGGCG ACGAACAGGT TCGTGTGCGA 
    GGTGTGCAAC AAGGGGTTCC AGAGGGAGCA GAACCTGCAG CTGCACCGGC 
    GAGGGCACAA CCTGCCATGG AAGCTGAAGC AGAAGAACCC CAAGGAGACG 
    CGGCGGCGGG TGTACCTGTG CCCGGAGCCG TCCTGCGTCC ACCACGACCC 
    GTCGCGAGCC CTCGGCAACC TCACCGGCAT CAAGAAGCAC TACTCCCGCA 
    AGCACGGCGA GAAGAAGTGG AAGTGCGACA AGTGCAACAA GCGCTACGCC 
    GTCCAGTCCG ACTGGAAGGC TCACTCCAAG ACCTGCGGCA CCCGCGAGTA 
    CCGCTGCGAC TGCGGCACCC TCTTCTCCAG GAGGGACAGC TTCATCACCC 
    ACCGCGCCTT CTGCGACGCG CTGGCGCAGG AGAGCGGCAG GATTATGCCA 
    CCCATGGGCG CCGCCCTGTA CGCCGCCGCC GGCGCCGGCA TGGCCATCGG 
    CGGCCTCACC GGCATGGCCG CCTCCCACCA GCTCCAACCG TTCCAGGACC 
    ACTCCTCGGG GAGGGGAGGG GAGTGGAGGG GAGGGAAGGC GGCGACGAGG 
    AGAGGAGACG CGACGATGAC GGCGCCGACG ACGACGACGA CGATGGCGAC 
    GACGCGACGA CGACGACGAC GACGACGACG GCGACGACGC GAGTACGACG 
    ACGACTGCTG CGATGACGGC GCTGACGCGA CGACGACGAC GGCGCCACCT 
    ATGGAGGCCG GCGGATGGAC GACAACGGCG TTTTTTTTAA GTTTACATGT 
    TGATTGATGT TGATTGATGT TAGCTTGCAA GTTGATGATG TTGATTTATG 
    ATTTGAAACC TAGGATGGGT GGGGTGGGCT GGCGGGAAAT TTTTTTGTTG 
    CGCGGTGAAT GTAGCGCCTG CAAAGAATGA ACTGCTGCAT GCGAAAATTA 
    TTTTTGCAGG CGGTGCTTTG GTCCATCTAA AAAAATTAAG GATTTTTACA 
    GTCGTTT

    Gene models with high sequence identity

    1. AT1G14580.2 [+] show detail - C2H2-like zinc finger protein
      E-value: 1e-89; Score: 327.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, C2H2-type 11.094
    PatternScan Zinc finger, C2H2-type 0
    HMMSmart Zinc finger, C2H2-like 0.0041
    HMMSmart Zinc finger, C2H2-like 120
    HMMSmart Zinc finger, C2H2-like 110
    superfamily C2H2 and C2HC zinc fingers 2e-05
    superfamily C2H2 and C2HC zinc fingers 3.5e-05
    HMMPfam zf-C2H2_jaz 2.2e-05
    HMMPanther UNCHARACTERIZED 2e-11
    HMMPanther SERINE/THREONINE-PROTEIN KINASE RIO 2e-11

    See the detailed result >

    AT1G14580.2

    Model type
    Protein coding
    Short Description
    C2H2-like zinc finger protein
    Computational Description
    C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1).
    Link
    InterPro Scan - TAIR