K25936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25936

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25936

Determination of introduced cDNA(s)

  • J033119N09 - Rice Full-length cDNAs - Original: J033119N09

    full reading [+] show sequence

    Nucleotide sequence: J033119N09 - full reading 
    GGATTTCAGT GTGTTTTGAG ACTTGGGCCC TTATACAAAG GCCCGTAGTA 
    CACTAGGCCT CCGACTCTCG CCTTCCCCTT CCTTGTTGCC CCCTTACCCA 
    AGTTGATCCG TCGCCGAGTT CGCCTGAGCC CCAATCTCCG ATCCCCCACC 
    ATCGCCGGCG CCGCCGCCGC TCCACCCTGC CGCTTTTCCT CCCGCCGCCG 
    CATCCTCGCC GCGCGGGATG GCCGGAGCGA CGGATCTCCC CCCGAAGGGC 
    GGGTTCAGCT ACGACAATTG CGCGAGGAAC GCCATGCTTG TGGAGAAGGG 
    CTTGAAGATG CCTGGGTTCC TCAAGACCGG GACTACCATC GTCGGTTTGG 
    TCTTTCAGGA TGGTGTTGTT CTTGGGGCAG ACACGAGGGC CACCGAGGGT 
    CCTATAGTTG CTGATAAGAA CTGCGAGAAA ATTCATTATA TGGCGCCAAA 
    CATATATTGC TGTGGAGCAG GAACTGCCGC TGACACTGAG GCTGTAACAG 
    ATATGGTCAG TTCCCAGCTT CAACTTCACC GTTATGCAAC TGGTCGTGAG 
    TCCAGAGTTG TAACCTCTCT TACATTACTG AAGTCGCACC TTTTTAGCTA 
    CCAAGGTCAT GTCAGTGCTG CCCTTGTTCT TGGTGGAGTA GATGTTACTG 
    GGCCACACCT GCACACTGTT TATCCACATG GCTCCACGGA CACTCTTCCT 
    TTTGCCACAA TGGGTTCTGG ATCCCTTGCG GCAATGTCAG TGTTTGAATC 
    GAAGTACAAA GAAGGCCTCA CAAGGGAGGA GGGAATACAA CTTGTTGCTG 
    AGGCAATTCG TGGTGGTATC TTCAATGACT TGGGCAGTGG CAGCAATGTG 
    GATGTTTGCG TAATCACCAA GGGGAAGACA GAGTACTTGA GAAACCACCA 
    GTTACCAAAT CCAAGGACTT ACGTTAGTTC GAAGGGGTAC AACTTCACCA 
    AGGGGCAGAC TGTGGTGTTG TCCACAAAGA TAACACAACT GAAGCCGAAG 
    GTAGAGGTGA CAGAGGGTGA TGCAATGGAG GAGTGATTTT GTGTGCTTAC 
    ATTCAGACAA GCAGTCACGT TGAGAACATA TGCTTTCATT TCAGTGGAAA 
    TGCTTGAACA AAAAAAGATG ACTCTTGTTG TACTTCCTTG GGCTTAATGC 
    ACATCTTTAA GTTGATTTTC GACACATTTA TGGAGGACCG ATCTT

    Gene models with high sequence identity

    1. AT3G27430.2 [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
      E-value: 1e-128; Score: 456.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase T1A, proteasome beta-subunit 1.5e-08
    FPrintScan Peptidase T1A, proteasome beta-subunit 1.5e-08
    FPrintScan Peptidase T1A, proteasome beta-subunit 1.5e-08
    Gene3D no description 2.5e-64
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 2.4e-64
    HMMPfam Proteasome, subunit alpha/beta 7.3e-47
    HMMPanther PROTEASOME SUBUNIT BETA TYPE 7,10 1.7e-157
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 1.7e-157
    PatternScan Proteasome, beta-type subunit, conserved site 0

    See the detailed result >

    AT3G27430.2

    Model type
    Protein coding
    Short Description
    N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
    Curator Summary
    Encodes 20S proteasome beta subunit PBB1 (PBB1).
    Computational Description
    PBB1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2); Has 6205 Blast hits to 6204 proteins in 593 species: Archae - 869; Bacteria - 486; Metazoa - 2030; Fungi - 1274; Plants - 670; Viruses - 0; Other Eukaryotes - 876 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR