K26014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26014

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26014

Determination of introduced cDNA(s)

  • J033047C15 - Rice Full-length cDNAs - Original: J033047C15

    full reading [+] show sequence

    Nucleotide sequence: J033047C15 - full reading 
    TAGACCCCTC CACGGCGACG GCCATGGCGA ACAGCAAGAG CCTGCTCCTC 
    TGCTGGTGCT CGCTCCTCCT CCTCCTCCTC GCCGCCGCAG CGCCGCCCGC 
    CCTCGCCATC CCGCTCTGCA CCGACTCCAG GGCGCCGGTG CCGCTGAACG 
    GGACGACGCT GGGCTTCTGC GGCGGCGGGG GGAGCGGGAG CAGCAGCTGC 
    TGCGGCGCCG CGGATGATGC CGCGCTGAGG AAGCGGTTCG AGGCGATGAA 
    CGTCTCCGAC GCCGCGTGCG CCGGGGTCGT CAAGTCCGTC CTCTGCGCGA 
    AATGTAATCC ATATTCGGCT GAGTTGTTCA ACTCAAGCTC AAAGATTCGG 
    ATGGTTCCCG TCCTGTGCAA TGGATCAGCT TCAGCTAGTT CTACTCAATC 
    GAAGGATTCT ACACAAGACT ACTGCAAACT AGTTTGGGAA ACATGCAAGA 
    ATGTGACAAT ACTGAATTCT CCTTTTCAAT CTCCTTTGCA AGGTGGTGCA 
    ACATTACCTA GTTCATCATC AAAACTTACT GATGTTTGGC AGTCAGAAAA 
    TGACTTTTGT ACATCATTTG GTGGCTCATC TGACAACCAG TCAGTATGCT 
    TAAATGGAAA TGAAGTTTCA TTTAGCACTT CAGAACCATC ACCCAGTCCT 
    AAAGGGGTGT GTATTGAGAG AATTGGAAAC GGGACATACT TGAACATGGC 
    TCCTCATCCG GATGGATCCA ACAGAGTTTT CTTGTCTAGC CAAGCAGGTA 
    AAATATGGTT GGCAACTGTC CCAGAACAAG GCTCTGGAGG CATTCTGCAA 
    TTTGATGAAG CCAGCCCATT TATTGATCTA ACTGATGAAG TCCACTTTGA 
    TTCTGAGTTT GGACTCATGG GTATAGCATT TCACCCAAAG TTTGCTACCA 
    ATGGGCGCTT CTTTTGTTTC TTATAATTGT GACAGAACTC AGTCATCTAA 
    CTGTGCTGGT AGGTGTTCAT GTAATTCTGA TGTTAACTGT GATCCTTCAA 
    AGCTTGGATC TGATAATGGT GCCCAGCCAT GCCAGTACCA AGTTGTTGTT 
    GCAGAGTACT CTGCGAAAGT CTCATCATCA AATGTTTCGG AGGCAACATC 
    TGCTAATCCA TCCGAGGTTA GAAGGATATT TACAATGGGA CTGCCATATA 
    CAGCCCACCA TGGGGGACAG ATACTTTTTG GACCTACAGA TGGATATCTG 
    TACCTTATGA TGGGTGATGG TGGAAACAAA GGCGACCCTT TTAATTTTTC 
    TCAAAATAAG AGATCACTTT TGGGGAAAAT TATGAGGCTT GATGTTGATG 
    GCGTTCAAAG CCAGAGTCAA ATCATTAACC AGAGCTTGTG GGGTAATTAT 
    TCTGTTCCTA AAGACAACCC ATTCAGTGAC GACCGAGACT TACAACCAGA 
    GATTTGGGCC TTGGGCTTGA GGAACCCATG GAGATGTAAT TTTGATTCTG 
    AGAGGCCTTC CTATTTCTAC TGTGCAGATG TTGGGCAGGA TTTATATGAA 
    GAGGTAGATT TGATCTCGAA GGGTGGAAAC TATGGATGGC GTGCATATGA 
    GGGCCCATAC ATTTATCATC CAGAATGGAC TCCTGGAGGG AATACATCGC 
    TTAATTCTAT AAATGCCATC TTCCCTGTTA TGGGCTACAG CCATTCTGCT 
    ATCAACAAGA ACACTGGGTC TGCATCAATT ACAGGTGGAT TTGTTTATCG 
    AGGGTCTTCT GATCCCTGCC TATATGGAAG GTACATATAT GCTGATCTTT 
    ACGCGTCAGC AATGTGGACC GGCACAGAGA CCCCAGAGAG CAGCGGAAAC 
    TACACCTCAA CTCTGATTCC GTTCAGCTGC TCCAAGAACT CTCCAATACC 
    CTGCGAATCT GCATCAGGCA GCAACCAACC ATCGTTGGGC TACATTTTCT 
    CCTTCGGCGA GGACAACAAC AAGGATGTCT TCCTTCTAAC ATACAAAGGC 
    GTCTACCGAG TTGTCCGGCC TAGCCTCTGC GGCTACACCT GTGCCGCGGA 
    GAAACCAGAG ACCAACAACA ATGGAACGTC TCCCTCAGGC TCTTCATCAT 
    TTGCTTCAGG AAGGAGGATA GGGAAGTTGG CAGTAGTAAT GGCGTTTGTT 
    TTGTGTGCAT TATTCTTCTG AGATGTCCAT CCCTGTTAGC TTGTTATATA 
    TCATGTATGG TTTCTTTCGC ACCTGCTGTA CAGCATTGAC GAGCCCTACA 
    CGTCTGTGTG ACTGTTTGTG ATTATTAGTA GTATTTGGTT GTGCTTAGTT 
    CTCAAGTGGT GGGCTTGTGC AATGTAGCAT TGTGATGACT GAAAATTAAT 
    TAGCCGTGCT TGCCTTTAGG ATTGGGCAAT GGGCAAGAAT ATTTGGCAAG 
    TGGAACCACG TTACTGTTAT AAATGAAAGT TGTACGGGGG GTAAGCTTTG 
    TTCTGAACCT TTAGTTTTCG GGCTTGTTTG GTTTGGTGCT AAATTATGCC 
    CAACTAATTC ATTGGTAATT TTG

    Gene models with high sequence identity

    1. AT1G74790.1 [+] show detail - catalytics
      E-value: 0; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Six-bladed beta-propeller, TolB-like 2.5e-59
    Gene3D Six-bladed beta-propeller, TolB-like 1.8e-07
    superfamily Soluble quinoprotein glucose/sorbosone dehydrogenase 3.5e-39
    superfamily Soluble quinoprotein glucose/sorbosone dehydrogenase 6.1e-06
    HMMPanther THYROID HORMONE UPREGULATED/GENE 5-RELATED 1.9e-53
    HMMPanther PQQ OXIDOREDUCTASE-RELATED 1.9e-53
    HMMPanther THYROID HORMONE UPREGULATED/GENE 5-RELATED 2.6e-150
    HMMPanther PQQ OXIDOREDUCTASE-RELATED 2.6e-150
    HMMPfam GSDH 6.1e-05

    See the detailed result >

    AT1G74790.1

    Model type
    Protein coding
    Short Description
    catalytics
    Computational Description
    catalytics; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose/sorbosone dehydrogenase (InterPro:IPR011041), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: hipl2 protein precursor (TAIR:AT5G62630.1); Has 3691 Blast hits to 3691 proteins in 820 species: Archae - 60; Bacteria - 1937; Metazoa - 139; Fungi - 4; Plants - 281; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR