K26027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26027

Determination of introduced cDNA(s)

J023054G23 - Rice Full-length cDNAs - Original: J023054G23

full reading [+] show sequence

GCTCTTCTTC CTCCGCTCCA TTCTCCTCCC ACCCTCCCCT GCGCCATCGC 
CGACGCGCGC CGCGGCGAAC CCACCGGATC ATCTTCTCGC GCGCCGCCGA 
ATTCCCTCCC GCCTCCGCCG AATCCACCGG CGGGCGCCCG ATCCCTCATC 
CTCCTCCTCC TCTGCTCGTG CCGCAGGCGC GGGCGGACTC CCTCTTTCTC 
TCTCGATTGG AAGGAATAGC TGCTTACTGT TGAATATTGA CTTGCTTTTG 
TTGCTGTCAC AATGTCGGGC CTGCTGAATT CAAACCTGAA CAATTCTGCG 
TCAAATCTTC AAGACTCAAC TGGAAGACCG TTTACAGGGT CCTTTTCTGG 
TCAATCTGGA TCAGTTCCAG GGGGTTTCCA TCACTCTGGT TTGCACAACA 
TGCATGGAAG TTTAAATATG CCAAATATGC CTGGATCGTT TTCTCAGAGG 
AATGCTGCCA TGAGTGGCCT TCCATCCTCT GGGGTTCAAC AGCCTGGAGG 
GAGCATGCCT GGGAGATTTG CTTCAAACAA CCTTCCAGTT GGCATGTCCC 
AGATCCCTCA TGGTCATTCA GGAGTCGGTA GTAGAGGATT GAATGTTGGT 
GGAGGTCCAG CATTTAGTAG TAGCCTGAAT ATTGGTGGTA CCATTCAAGG 
CTTATCCTCA AACCTGGGTG CTGGTGGTAG TCGTAATTCT GTTCCTGGGA 
TGTCAGTATC TCCATCTTTG GGAAATTTGG GTCCTAGGAT CACTGGTTCT 
GTAGGAAATA TTGTGGGTGG AAGTAACATT GGAAGGAATA TAAGCTCTGG 
TGGATTATCT GTGCCAAGCA TAGCATCACG CATGAATTTG AGTGGCAATG 
TTGGCAGTGG CGGTCTGAAT GTCCAAGGAT CCAGCAGGAT GATGAATGGC 
ATTCTTCAGC AAGGATCACC TCAAATGCTG AACATGATGG GGAGTTTATA 
TCCAACATCT GGAGGTTCTT TATCTCAGAA CCAAATACAA GGAGGAAATA 
ATTCCCTTGG TTCTATGGGG ATGCTGCATG ATGCCAGTGA CGGTGCTCCA 
TTTGACATGA GTGATTTTCC CCAGCTGACT GGTCGACCTA GTTCTGCGGG 
TGGTCCACAA GGACAATATG GCTCCCTACG GAAGCAAGGA GTTGGTGTTA 
ACACCATTGT TCAGCAAAAC CAGGAATTCA GCATTCAAAA TGAAGACTTC 
CCGGCTTTAC CTGGATACAA AGGCAACACT ACAGATTATG CTATGGAGTT 
GCATCACAAG GAACAACTTC ATGATAATGT ACCTGTTATG CAAGCGCAAC 
AATATCCGAT GTCAAGATCA GTTGGCTTTA ACTTAGGAAG TAACTACCCA 
CCAAATCGTC AGCAACACCA GCAAGGTGCT AATTCAGTTC AGAATGCTGG 
TCCCCCAAAT ATCGGACTAA GACCACTAAA TTCTCCAAAT CAAACTTCTA 
GTTTGGGATC ATATGAGCAA CTTATCCAGC AATACCAGCA ACCTCAGGCT 
CAAAATCCTT TCAGATTGCA GCAGGTGTCT TCAGCTACCC AGTCATATAG 
GGATCAGAGT CTAAAGTCCA TCCAGGGGGG CCAAACACCA TCTGATCCAT 
ATGGCTTGAT GGGATTGCTA GGAGTTATCA GGATGAATGA TGTTGACTTA 
TCATCTCTTG CTTTAGGAAT AGATTTGACA ACATTGGGTT TAAACTTGAA 
CTCACCAGAC AATCTGTACA AGACATTTGG CTCTCCATGG TCAAACGAGC 
CAGCAAAAGG

Gene models with high sequence identity

AT5G59710.1 [+] show detail - VIRE2 interacting protein 2
E-value: 2e-116; Score: 417.00

InterPro Scan Digest

See the detailed result >

AT5G59710.1

Model type: Protein coding
Short Description: VIRE2 interacting protein 2
Curator Summary: Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.
Computational Description: VIRE2 interacting protein 2 (VIP2); CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 3791 Blast hits to 3038 proteins in 463 species: Archae - 1; Bacteria - 1471; Metazoa - 837; Fungi - 516; Plants - 178; Viruses - 9; Other Eukaryotes - 779 (source: NCBI BLink).
Link: InterPro Scan - TAIR