K26230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26230

Determination of introduced cDNA(s)

J023028J18 - Rice Full-length cDNAs - Original: J023028J18

full reading [+] show sequence

GCTACCAACA AGAGTTGATT CTACAGTACA GATCCCTCCC TCCTCCAAGC 
TTTCCCATGG CGCTGCAGTA CGTGGAGGCA CAGCGCAGGC GCGCCCCGAC 
CTCGCCGACG CCTACGCCGA CCTCGCCGAC CTCTACCAGC GCAAGCTCTG 
GCACCAGCTC ACCCTCAAGC TCGACCACTT CCTCCAACTC CCCGCCGCCC 
AGACTGGCGA CACCATCATA CAGCTCTACA ACAATTTCAT CTCTGACTTC 
GAGACGAAGA TCAATCTTCT CAAACTTGCC CACTTCGCGG TCATCGCTTC 
ACGCCAGTAC CCTGACAAGG ATGCCGCGAT TAGTTTCCTC GAGGGGGTAA 
CCGCAAAACT GCGCGAGACG AGGGAACGGC GCATCGATGA ACCCGTTCTC 
TATGTCAAGA TGCAGATAGC TGCAATTAAC CTTGAGAAGG GAGATCAAAA 
GGAGTGCAAG AAGCTTTTGG ATGAAGGGAA ATCCACCCTT GATAGCATGA 
CTGATGTTGA TCCCACAGTC CATGCTAGCT TTTATTGGAT ATCATCTCAG 
TACCATAAGG CTTGCCAAGA ATTCGCTGAA TTCTATAAGA ATGCTCTTCT 
TTATCTGGCC TACACTACTG TGGAGTCGCT CTCTGAGTCA TTCAAGCTGG 
ATTTGGCATT TGATCTCTCC CTTGCAGCCT TGCTTGGTGA TAACATATAC 
AACTTTGGGG AATTATTAGC TCACCCGATT ATCAACAGTC TAATTGGAAC 
CAAGGTGGAG TGGGTCTATC ATATGTTGCA AGCATTCAAC ACTGGCAACC 
TAGCTCTCTA CCAAGAACTT TGCAAGGTCC ACAACGCTGC TCTTAGTGCA 
CAGCCAGCTT TGGTGCAGAA TGAACGAAAA CTGCTAGAGA AGATCAACAT 
TCTATGTCTG ATGGAGATAA TCTTTACCCG GCCATCAGAA GACAGAACTA 
TCCCATTAAG TGTTATAGCT GAGCGCACTA AGCTTTCTAT CAGTGATGTG 
GAATATCTTC TTATGAAGAG CCTCTCGGTT CATCTTATAG AAGGGATAAT 
TGATGAGGTG GACAGCACAG TTCACGTGTC ATGGGTCCAG CCTAGAGTAC 
TTGGAATTCC ACAGGTGAAG GCCTTGCGTG AGCGGCTGGA CGCATGGGTC 
GGAAAAGTTC ACACTACACT GTTGTCAGTT GAGGCAGAGA CCCCTGATCT 
TGTGGCTGCA TAACTTATCG ACCACTTGTC CTTTCGCTAT ACGAGCTTGG 
TCAACAAGGC TGCGGTGCTT AATGAGAGGT GATCTGGCTG TGGTGCTTAT 
AGTTTTCTGG AGAATGAGAA CATGTTGCCT TGGATATTTC CCTGCGTCCT 
GTTGATCAGG ATCTGTAATT TCACCCTTTC TTTTATCCTT TGGGCATTGA 
GTCCTGGAGC TATCACGGAA AAGATACAAA CGGGCCAAAA GTTTCATACC 
GGCAAGATGT TATCGTAGTT CTTTTAGTCA AATTTAGATT GTAATGCAGA 
GGATATTTTC CCCTTTT

Gene models with high sequence identity

AT4G19006.1 [+] show detail - Proteasome component (PCI) domain protein
E-value: 1e-155; Score: 546.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Proteasome component (PCI) domain	1.1e-11
HMMPfam	Proteasome component (PCI) domain	2.5e-10
HMMPanther	26S PROTEASOME SUBUNIT	3e-135

See the detailed result >

AT4G19006.1

Model type: Protein coding
Short Description: Proteasome component (PCI) domain protein
Computational Description: Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G45620.1); Has 1087 Blast hits to 1083 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 564; Fungi - 232; Plants - 168; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link: InterPro Scan - TAIR