K26240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26240

Determination of introduced cDNA(s)

J033133J17 - Rice Full-length cDNAs - Original: J033133J17

full reading [+] show sequence

GAGTAGCTGC TAATTAAGCA GCAAGCAAAG GTACCCAGCA ACCTTCCCTT 
TGGCTTCCCC CACAAAACGC GGCCGCCGCG CGCGTATCCG AGGCTGAGGC 
TCCTCTTCCT CTTCCTCTTC CTCCTCCTCT CGGCGGCGGC GGCGGCGGCG 
GGTCTCCATT TGCTCAAGCT TGCCTGCCAT GCCCATGGGG ACGAGGTAGC 
GCTTCCCTTC CTGCCTGCGG TACATACTAA CTAAGCAGAG GGCATCCCTC 
ATATATAGGC TTTGCGAAAT CAATCAACAA GCTTGGGGAG GAGAAGAGGA 
AGAGGAAGAG GAGATGGAGC AGGGGGGTGA GGCCGGCACC GGCGGTGGGC 
TGGGCAACCT GCGCGCGCTG CTGGCCATCC TCCAGTGGTG GGGCTTCAAC 
GTCACCGTCA TCATCATCAA CAAGTGGATC TTCCAGAAGC TGGATTTCAA 
ATTTCCTCTG ACGGTGTCTT GTGTCCACTT CATATGCTCT TCAATTGGGG 
CTTATATTGC AATCCATGTG CTCAAAGCAA AACCACTCAT TCAAGTCGAA 
CCAGAAGACC GTTGGAGAAG GATTTTTCCA ATGTCATTTG TCTTCTGCAT 
AAACATCGTG CTCGGAAATG TCAGCCTGCG CTACATCCCA GTCTCCTTTA 
TGCAGACTAT CAAATCTTTC ACCCCTGCAA CCACGGTTAT TCTGCAGTGG 
TTAGTTTGGA GCAAGCATTT TGAGTGGCGC ATATGGGCTT CGCTGGTCCC 
AATAGTTGGG GGAATACTCC TAACTTCAAT AACAGAGCTT AGTTTCAACA 
TGTTTGGTTT CTGTGCTGCC ATGGTTGGCT GCCTTGCTAC ATCTACCAAG 
ACCATTTTGG CAGAGTCTCT ACTCCACGGA TACAAATTTG ACAGCATTAA 
CACAGTGTAC TACATGGCAC CCTTTGCCAC CATGATACTG GCTCTACCAG 
CAGTGTTACT TGAAGGAGGC GGTGTGGTTA CCTGGTTCTA CACACATGAC 
TCCATTGCTT CTGCACTAGT TATCATCATA GGCTCTGGAG TGCTTGCATT 
TTGCCTAAAC TTCTCCATTT TCTACGTGAT CCATTCAACC ACTGCAGTGA 
CCTTCAATGT TGCTGGCAAC CTGAAAGTTG CTGTTGCTGT ATTGGTGTCA 
TGGTTGATCT TCCGGAACCC TATCTCTCCT ATGAATGCAA TCGGATGCGC 
GATCACGCTC GTTGGCTGTA CTTTTTATGG GTATGTGAGG CATTTGATCC 
CTCAACAGCA GGCTGTAGCT CCAGGAACAG GAAGCCCAAC AACATCGCAA 
ACAAATTCGC CGAGAAGTCG GATGGAGATG CTCCCCCTTG TAGGCGACAA 
GCAAGAAAAG GTTTAACAAA AGAATACACT TTGTACTATG CAATAGTCAT 
TATGGTCTGG ATTCCCTTGT AGTTCGAACT ATTGTGTTCC TTCAAGTTAC 
TGTTTTCAAA TTGGCCAGAA ACTGCCGCAC GCTAAACTTC CTTTCTGTGT 
AGTGCATACG GAATTTTTTC TACTACTAGG ATGTCACGCA AGTCCAGCGT 
CATTTTCTGT TGCTAGACGT GTAACGCACT GAATGAACAG TTGGATATCT 
CATCT

Gene models with high sequence identity

AT1G77610.1 [+] show detail - EamA-like transporter family protein
E-value: 2e-160; Score: 562.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SOLUTE CARRIER FAMILY 35	8.1e-88
HMMPfam	Protein of unknown function DUF250	4.1e-27
superfamily	Multidrug resistance efflux transporter EmrE	3.1e-08
superfamily	Multidrug resistance efflux transporter EmrE	1.6e-05
Coil	coiled-coil	0

See the detailed result >

AT1G77610.1

Model type: Protein coding
Short Description: EamA-like transporter family protein
Computational Description: EamA-like transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 5 (TAIR:AT1G21870.1); Has 3475 Blast hits to 3470 proteins in 365 species: Archae - 2; Bacteria - 169; Metazoa - 728; Fungi - 565; Plants - 1539; Viruses - 0; Other Eukaryotes - 472 (source: NCBI BLink).
Link: InterPro Scan - TAIR