K26510

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26510

Determination of introduced cDNA(s)

  • J033133P19 - Rice Full-length cDNAs - Original: J033133P19

    full reading [+] show sequence

    Nucleotide sequence: J033133P19 - full reading 
    GGCCCCTTGC TGCGCCGCCT CCCTCGTCTC GTCTCGTTCC TCCCTCTCCG 
    GCGGCCGGAT CGGCGAACCC CCTCCCGCCG CCGCACGCGC GCGCGCTCCC 
    CGGCTTCGCC GCCGAGCAGA GGGGTAGCGG AGGCTAGGGC TCCCTTCCGG 
    GAACTTAACT TCCAACTTCA AGATGTTCCC CCCAGGCAAC AATTCTTTGG 
    CTCTTTCAGC CCCAAGGCCA GGAATGGAGC TGGCTAACAT TCAACAGCAT 
    CCTAATCAAG CTCTTGGGCC TGGTGGGAAG CAACGTACAT CCAGTCTGGA 
    GGCCCCAATA ATGCTACTCA CAGGCCATCA GAGCGCTGTG TACTGTATGA 
    AGTTCAACCC TGCAGGAACT GTGATAGCAT CAGGCTCCCA TGACAAGGAT 
    ATCTTCTTGT GGTATGTCCA TGGTGACTGT AAGAACTACA TGGTACTGAG 
    AGGGCACAAG AATGCTGTTC TTGACCTTCA ATGGACTACT GATGGGACTC 
    AGATCATCTC TGCAAGCCCT GACAAGACTG TGAGAGTGTG GGACGTTGAG 
    ACTGGCAAGC AAGTCAAGAA GATGGCCGAG CACTCATCTT TTGTCAACTC 
    ATGTTGCCCG GCTCGAAAGT GGCCACCTCT GGTTGTAAGT GGATCGGATG 
    ATGGAACAGC AAAGCTGTGG GATTTGCGTC AAAGAGGTGC TATACAAACA 
    CTTCCCGACA AGTACCAGAT TACAGCCGTC AGCTTCTCAG AGGCGGCAGA 
    TAAGGTTTTC ACTGGTGGCC TAGACAATGA TGTCAAATGG TGGGATCTCC 
    GTAAGAATGA AGTGACAGAG TATCTCAAAG GACACCAGGA CATGATAACC 
    GGAATGCAGC TTAGTCCAGA TGGGTCTTAT CTCCTAACCA ATGCAATGGA 
    CAATGAGCTC AAAATCTGGG ACTTGCGCCC TTACGCCCCA GAGAACCGGA 
    ACATCAAGAC CCTCACAGGA CACCAGCATA ACTTTGAGAA GAACCTGTTG 
    AAGTGCAGCT GGTCCCCTGA TAATCGCAAG GTCACTGCCG GGAGTGCTGA 
    TCGCATGGTC TACATCTGGG ACACAACATC AAGGCGGATC TTGTACAAGC 
    TTCCTGGCCA CAACGGTTCT GTCAACGAGA CCGCATTCCA TCCCACCGAG 
    CCTGTCATTG GATCTTGCGG CAGTGACAAG CAGATTTATC TTGGGGAGCT 
    TTAAGGGTAC TACCATCACA TTTTCATCTA GAAGCTATTG TACTATCTTG 
    TTATGAAGGC AAACAGAAAC TACCATCCTT GCAATGTTTC TTCATCTGAA 
    AAATTCTAAT GCACGATTGA CTGACC

    Gene models with high sequence identity

    1. AT2G43770.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 2e-161; Score: 565.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 14.184
    ProfileScan WD40 repeat 2 17.86
    ProfileScan WD40 repeat 2 10.508
    ProfileScan WD40 repeat 2 10.341
    ProfileScan WD40 repeat 2 15.555
    ProfileScan WD40 repeat 2 10.575
    ProfileScan WD40 repeat 2 9.339
    ProfileScan WD40-repeat-containing domain 57.475
    Gene3D WD40/YVTN repeat-like-containing domain 5.5e-81
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    FPrintScan G-protein beta WD-40 repeat, region 1.9e-08
    FPrintScan G-protein beta WD-40 repeat, region 1.9e-08
    FPrintScan G-protein beta WD-40 repeat, region 1.9e-08
    HMMPanther U5 SNRNP-SPECIFIC PROTEIN-RELATED 7.8e-195
    HMMPanther WD40 REPEAT PROTEIN 7.8e-195
    HMMPfam WD40 repeat, subgroup 8.9e-10
    HMMPfam WD40 repeat, subgroup 3.9e-09
    HMMPfam WD40 repeat, subgroup 4e-08
    HMMPfam WD40 repeat, subgroup 0.0059
    HMMPfam WD40 repeat, subgroup 9.8e-06
    HMMPfam WD40 repeat, subgroup 0.0015
    HMMPfam WD40 repeat, subgroup 8.1e-05
    HMMSmart WD40 repeat 1.4e-07
    HMMSmart WD40 repeat 9.9e-10
    HMMSmart WD40 repeat 7.5e-06
    HMMSmart WD40 repeat 0.028
    HMMSmart WD40 repeat 3e-06
    HMMSmart WD40 repeat 2.7e-05
    HMMSmart WD40 repeat 0.017
    superfamily WD40 repeat-like-containing domain 3.4e-82

    See the detailed result >

    AT2G43770.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 103598 Blast hits to 39924 proteins in 946 species: Archae - 84; Bacteria - 11408; Metazoa - 41998; Fungi - 22646; Plants - 13468; Viruses - 6; Other Eukaryotes - 13988 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR