K26742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26742

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K26742

Determination of introduced cDNA(s)

  • J033098E22 - Rice Full-length cDNAs - Original: J033098E22

    full reading [+] show sequence

    Nucleotide sequence: J033098E22 - full reading 
    GGCTGGTCCA GCAGCTTTGA ACACAAGCAC GGAGACGCAA TTCTGGCATC 
    CTGCGGGGAG GAAAATGCAG CGGCGGTGCA GTACTCTCCC CGGATCCGCA 
    TCCAGATCCT CCCCCGATCT CGATGGCATC TGGACAAAAC TCCCGCGGGC 
    CCCACCAACT GATGCCGGCC CCACCAACTG ATCTCCCACT GTGTACCAGT 
    CGCTGTGCCC GCTAGCTCCC CCAGTCTCCG GGGAGACCGA CCGTGCGAGA 
    TCGCGACCAC GTAGTGCGGC GCTCGCTCTC GCTCTCCCCC GCGGCAGAGT 
    CAGGCGCCGC CCGGCGAAGC GCGAGGCCCG CGGAGCAATG GATTTCAAGG 
    GGTTCTGGGA GTCCAGATTC GGGGGCAAGA AGGAGCAGGA GCCGGAGCAG 
    AACGGGCACG CCAATGGGGT GGCGAACGGG AGCGTCAGGA AGAGGACGTC 
    CGATTTGGCG GTCTACGAGC AGTTCGAGCA GCAGGCCAGG CAGACGGAGG 
    TGCGCGCCGC GGCGATTCGC GATGGGAATG CTGATGCGAT CCAGAAGCCC 
    CTCCTACCTT CGTTTGAGTC AGCTGAAATG CGTAATCTTG CAGAGACATT 
    GTTGCGGGAC ATTATTCGCG GCAGTCCAGA TGTGAAATGG GGAAGCATCA 
    AAGGACTGGA GAATGCCAAA CGCCTTCTAA AAGAGGCAGT TGTCATGCCC 
    ATAAAGTATC CCAAATACTT CACTGGTCTC TTGTCACCAT GGAAAGGCAT 
    TTTACTTTTT GGTCCCCCAG GAACTGGGAA GACAATGCTG GCAAAGGCTG 
    TTGCTACTGA GTGTAAAACT ACATTCTTCA ACATTTCAGC ATCATCAATT 
    GTTAGCAAAT GGCGTGGGGA TTCAGAGAAG CTAGTTAAAG TTCTGTTTGA 
    GCTTGCTAGA CATCATGCAC CATCGACAAT ATTTCTTGAT GAAATTGATG 
    CTATTATCAG CCAACGTGGT GAAGCTCGCA GTGAGCATGA AGCTAGTCGA 
    CGCTTGAAGA CTGAGCTACT CATTCAGATG GATGGCTTGA CAAAGACGAA 
    CGACTTGGTA TTTGTACTTG CAGCAACAAA TTTACCTTGG GAACTGGACG 
    CAGCTATGCT CCGCCGGCTT GAGAAACGGA TTCTCGTACC TCTTCCTGAG 
    GCTGAAGCAA GGCATGCTAT GTTTGAGGAA CTTTTGCCAT CAACTACCTC 
    AAAGCTAGAG GTTCCATATG ATACTTTAGT TGAGAAGACT GAAGGGTACT 
    CTGGTTCAGA TATCCGTCTT GTGTGCAAAG AAGCTGCCAT GCAACCACTA 
    AGACGTCTTA TGTCAGTTCT TGAAGCCAGA GATGAGCTGG TGCCTGAGGA 
    AGAATTGCCC GAGGTTGGTC CTCTCAAACC TGAAGACATC GAAGTTGCTT 
    TGAGGAACAC AAGGCCGTCT GCGCATCTCC ATGCACATCG CTATGAGAAG 
    TTTAACCAGG ATTACGGAAG CCAGATCCTT AGTCAGGAGC AAGCCTGAAC 
    TTCTCAAAGT TCAGACATAC CATTTTCAGG ACGCAACATT TTTTCTGCAG 
    CAGTTTAAGT TGTGAGGCGA ACGTTACAAA CGGATGTTGC TGCTGCAGCA 
    GTTATGAAAT AAATAGCATC ATGAATATCG AACGC

    Gene models with high sequence identity

    1. AT2G34560.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 8e-139; Score: 491.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.2e-57
    HMMPanther KATANIN-RELATED 9.3e-171
    HMMPanther AAA ATPASE 9.3e-171
    HMMSmart ATPase, AAA+ type, core 1.7e-19
    HMMPfam ATPase, AAA-type, core 2.2e-40
    Gene3D no description 3e-52
    Gene3D no description 3.4e-11

    See the detailed result >

    AT2G34560.2

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR