K27007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27007

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27007

Determination of introduced cDNA(s)

  • J023100G12 - Rice Full-length cDNAs - Original: J023100G12

    full reading [+] show sequence

    Nucleotide sequence: J023100G12 - full reading 
    GGTCCCTCTC TCATCATCAT CATTCATCAA TCGTCGCCTG ATCGCCTCCA 
    GCGAAATTCT TCCTCCATTT CTCTCTCCAT CGAATCTCAT CCCAGCAGCA 
    GCAGCAGCAG CAGCAGCCGC CATGGATTCC AAGGCGGACG CGGAGTCAGC 
    CACGGCCAGG GCCGCCCGTC GTGTCGCCGC CCGTCTCCGC CAACCCCTAC 
    GTGGTCTCCG CCCCCTCCGC TCAGCCGCCC GCCAAGAGCG CCAGGGAGAA 
    TCTCCGGGAG AAGCTCGACG TGGTCGGGAG GAGGTTCGGG GACGCCGCGC 
    GCAAGACCGA GGGCATCGTC GGCGACATCT GGCAACATCT GAAAACTGGG 
    CCAAGCATTG CTGATACGGC GATGGGGAGG ATTGCTCAGA TATCCAAGGT 
    GATAGCTGAA GGTGGATATG ACAAGGTGTT CCACCAGACG TTCGAGTGCC 
    TGCCTGATGA GAAGCTCAAG AAGGCGTACG CATGCTACCT TTCGACCTCT 
    CATGGCCCGA TCATGGGCGT CTTGTACATC TCCACTGCCA AGATTGCATT 
    TTGCAGTGAC AGTCCTGTGG CGTATGTCAC CGAGGATAAT AAGAACCAAT 
    CTTCCATCTA CAAGGTAGTT GTACCCGTTG CTCAGCTAAG ATCAGTCACT 
    CCTACGGCAA GCCAGCAGAA CCCAGCAGAG AGGTACATCC AGGTGGTTTC 
    TGTCGACAAC CATGACTTCT GGTTCATGGG CTTCGTCAAC TACGACGGTG 
    CCGTGAAGAG CCTCCAGGAG GCCGTTCGTG GCGGCAAGGC TTCACTTCAC 
    CATCACATGT ATTTTTTGTG AACATCGCCG TTACATGTAT TGATCTGTCC 
    GTCGTTCGTC ATGCATCACT GGGAATTCGC ATGTGTCGGT GTGTTAAATT 
    GTCTGTACAG ATCGCTCCCC TTGCTGTGTA TATTGGCTGA AATTTGTGTT 
    GCATATGCAT TCATGTATTG TATGTAGTGT GTGGACTAGA TGTGTACAAA 
    TACTGGATTG ATTGTTGGCT TGATGCTCCA TTAAAGCCTT TCTGTTCGTT 
    GTTCC

    Gene models with high sequence identity

    1. AT2G22475.1 [+] show detail - GRAM domain family protein
      E-value: 6e-61; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GRAM 8.5e-16
    HMMSmart GRAM 2.1e-17

    See the detailed result >

    AT2G22475.1

    Model type
    Protein coding
    Short Description
    GRAM domain family protein
    Curator Summary
    Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.
    Computational Description
    GL2-EXPRESSION MODULATOR (GEM); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT4G40100.1); Has 360 Blast hits to 359 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR