K27416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27416

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27416

Determination of introduced cDNA(s)

  • J033105C09 - Rice Full-length cDNAs - Original: J033105C09

    full reading [+] show sequence

    Nucleotide sequence: J033105C09 - full reading 
    GACTGCGTGC GTGCCCATCG CGTGTGTCGC GTTGCGTTTG CTTGCGCGGA 
    ACGGCGGGAG AGATGGGGCG TCCACACCGT CGTCGGGACT GTGGGCACGG 
    CGCGGCACAC CGAGAGAGGT GCCGCATCCA ATCCAAACAA CTGCACTCCA 
    CTGTCCCCAC TCCCCCGGCG CGGCGTCTCC CTCCCCACGC TATTTTATAC 
    CACCACCACC ACCACCGCGT GGTACTTGCT CATACGCCGT ATCGACCACC 
    ACCCTCGACG GCGGCCATGG CGGGCGCCTC CTCCTACTTC TCGTTGCGGA 
    GGCTACTCCT CCTGCTGCTG CCGCTGGTAC CGTTGCTCGG CGCCACCACC 
    GCCGCCGCAG CGGGCGCCAA CTCGAGCGTC ACGTATGACC ACCGCTCCCT 
    CATCATCTCC GGCCGCCGCC GCCTCCTCAT CTCCACCTCC ATCCACTACC 
    CCCGCAGCGT CCCCGAGATG TGGCCGAAGC TGGTGGCCGA GGCCAAGGAC 
    GGCGGCGCCG ACTGCGTCGA GACCTACGTG TTCTGGAACG GCCACGAGCC 
    CGCCCAGGGC CAGTACTACT TCGAGGAGCG GTTCGATTTG GTGCGATTCG 
    CGAAGATCGT CAAGGACGCC GGGCTGTACA TGATCCTGCG CATTGGGCCG 
    TTCGTCGCCG CAGAATGGAC CTTCGGGGGC GTGCCGGTGT GGCTGCATTA 
    CGCGCCCGGG ACGGTGTTCC GGACGAACAA TGAGCCGTTC AAGTCTCACA 
    TGAAGAGATT CACGACGTAC ATTGTGGATA TGATGAAGAA AGAACAATTC 
    TTCGCTTCGC AGGGTGGGCA CATCATCCTA GCTCAGGTTG AAAATGAATA 
    CGGAGATATG GAACAAGCGT ACGGAGCTGG TGCCAAGCCA TATGCAATGT 
    GGGCAGCTAG TATGGCTCTG GCTCAGAATA CTGGTGTCCC TTGGATCATG 
    TGCCAGCAGT ATGATGCGCC TGATCCAGTG ATAAACACTT GCAATTCATT 
    CTACTGTGAT CAATTCAAGC CAAATTCACC AACCAAGCCA AAATTTTGGA 
    CTGAGAATTG GCCAGGATGG TTCCAGACCT TTGGCGAAAG TAATCCCCAC 
    AGGCCCCCTG AAGATGTTGC ATTTTCTGTT GCACGTTTTT TTGGGAAAGG 
    TGGCAGCCTT CAGAATTACT ATGTGTACCA TGGTGGAACA AATTTCGGTC 
    GCACTACTGG AGGGCCATTC ATTACTACTA GCTATGACTA TGATGCACCG 
    ATCGATGAAT ATGGCCTTAG GAGACTTCCG AAATGGGCTC ATCTAAGGGA 
    CCTTCACAAA TCTATCAAAT TGGGCGAGCA TACCCTGTTG TATGGTAATT 
    CGTCATTTGT TTCTCTGGGG CCTCAACAAG AGGCTGATGT TTACACTGAT 
    CAATCAGGAG GATGTGTTGC ATTCCTTTCT AATGTTGATT CAGAAAAGGA 
    CAAAGTTGTT ACTTTCCAGA GCCGGTCGTA TGATCTTCCT GCTTGGTCGG 
    TCAGTATCCT GCCTGACTGC AAGAATGTGG CGTTCAACAC TGCAAAGGTG 
    CGATCTCAAA CTCTGATGAT GGATATGGTC CCTGCAAATT TGGAATCATC 
    AAAAGTTGAT GGGTGGAGCA TTTTCAGAGA GAAATATGGG ATTTGGGGTA 
    ATATCGACTT AGTCCGAAAT GGATTTGTAG ACCATATTAA TACAACAAAA 
    GACTCTACTG ACTACCTATG GTACACAACA AGTTTTGACG TAGATGGAAG 
    TCATCTGGCA GGTGGCAACC ATGTTCTTCA TATTGAATCC AAAGGCCATG 
    CTGTTCAGGC TTTCCTGAAC AATGAGCTTA TAGGTAGTGC ATATGGTAAT 
    GGCTCAAAAT CAAATTTCAG CGTGGAAATG CCCGTCAATT TGAGGGCTGG 
    GAAGAACAAA CTTTCCCTAT TGAGTATGAC TGTTGGTTTG CAAAATGGAG 
    GACCCATGTA CGAATGGGCA GGAGCCGGCA TTACAAGTGT GAAGATCTCA 
    GGAATGGAAA ACAGAATAAT TGACTTGTCT TCCAATAAAT GGGAATACAA 
    GATTGGATTG GAAGGGGAAT ATTATAGTTT GTTCAAGGCT GATAAGGGGA 
    AGGACATAAG GTGGATGCCA CAGTCTGAGC CACCAAAAAA TCAACCAATG 
    ACATGGTACA AGGTAAACGT TGATGTTCCC CAAGGAGATG ATCCAGTTGG 
    ATTAGATATG CAGTCTATGG GGAAAGGCCT GGCTTGGTTG AATGGAAATG 
    CCATTGGGAG GTATTGGCCC AGGATAAGTC CTGTCAGTGA CAGGTGTACT 
    TCCAGTTGTG ACTATAGAGG AACGTTTTCT CCAAATAAGT GCAGGAGAGG 
    ATGTGGGCAG CCAACTCAAA GATGGTACCA TGTCCCACGG TCATGGTTTC 
    ATCCATCAGG AAACACCCTT GTGATTTTTG AGGAGAAGGG AGGGGATCCT 
    ACAAAGATCA CATTCTCAAG AAGAACTGTG GCAAGTGTGT GCTCCTTCGT 
    GTCAGAGCAC TACCCTTCCA TTGACTTGGA ATCCTGGGAT AGGAATACCC 
    AAAATGATGG TAGAGACGCA GCAAAAGTAC AGTTGTCTTG CCCCAAGGGT 
    AAAAGTATCT CTTCTGTTAA GTTTGTGAGT TTTGGAAACC CCAGTGGAAC 
    CTGCAGATCT TACCAACAAG GAAGCTGCCA CCATCCGAAC TCAATATCTG 
    TTGTTGAGAA GGCCTGTCTG AACATGAATG GCTGTACCGT CTCCTTGTCA 
    GACGAGGGAT TTGGAGAAGA TTTATGCCCT GGGGTCACCA AAACACTTGC 
    GATTGAGGCA GACTGCTCTT AAGGAGTTTA ACTCAGCAAT GAGATCCATC 
    GCTACAGATT CGCTCATCAA CTTGAAGCTT ATAGTGCTTG GTACAGTAGC 
    ATACTACAAC AACTTCGAAG TGAAATCCTA CCTAGATTTA GATTACGACC 
    TGTTATGAGC ATGATTTGGC ACTTTGTTTC TTTGACTTCT CTTTTGCTCA 
    ACAATATGTC CAGGTACCCT TGACGGGTCG CCATTGTGGA TGCTAACCAT 
    CCACCCGAGC AAAGGAATTA ATTGCACTGC ATTCCCAGGT TTGCAATGGA 
    CTACTGTATG ATTCAGAAAC ATGAAGGCAT GAACGAGCTT CTATGAGCCC 
    AAAAGGAATG GGATATAATA TAATATGATA TATTGCGATG CC

    Gene models with high sequence identity

    1. AT5G63810.1 [+] show detail - beta-galactosidase 10
      E-value: 0; Score: 954.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1e-114
    HMMPfam Glycoside hydrolase, family 35 6.1e-110
    HMMPfam D-galactoside/L-rhamnose binding SUEL lectin 2.9e-18
    HMMPfam Glycoside hydrolase family 2, carbohydrate-binding 1.6e-05
    superfamily Glycoside hydrolase, catalytic core 6.2e-76
    superfamily Galactose-binding domain-like 2.9e-27
    superfamily Galactose-binding domain-like 5e-16
    ProfileScan D-galactoside/L-rhamnose binding SUEL lectin 16.539
    HMMPanther BETA-GALACTOSIDASE 0
    HMMPanther Glycoside hydrolase, family 35 0
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66
    FPrintScan Glycoside hydrolase, family 35 8.7e-66

    See the detailed result >

    AT5G63810.1

    Model type
    Protein coding
    Short Description
    beta-galactosidase 10
    Curator Summary
    member of Glycoside Hydrolase Family 35
    Computational Description
    beta-galactosidase 10 (BGAL10); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to karrikin; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 8 (TAIR:AT2G28470.1); Has 2086 Blast hits to 2065 proteins in 466 species: Archae - 15; Bacteria - 851; Metazoa - 358; Fungi - 207; Plants - 597; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR