K27616

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27616

Determination of introduced cDNA(s)

J023087M13 - Rice Full-length cDNAs - Original: J023087M13

full reading [+] show sequence

GATTCTTCCT TTTTCCGGCG ACTCGCGAAT TGCGGGTGGA TTTGCTGCTT 
CCCTCGCTGT CGACTCGGCT CGGGCCGGTG CTTTTTTAAG TGACGTGAGA 
AGAAAGCGAG GCATCGAATC CAATCCAATC CAATCCAATC CAGAGTGGGG 
GTAAAACCAG CGATCTTTGA GGGGGCATTT TCTTTCATTT TTTTACTTTT 
TGGTTGGCTT GGGATTCGCC GCCGGTGTCC GATGGAGCGG TTCGTGCAGT 
TCTTGAGGCG GGGCAATGGG TTGATGGCGG CGTCGCTGGC GGCGGGGAGC 
TGCGCGGAGG AGGTGGCGAA GGCGGAGGGG GCCGGGTGCA GGGACGACGC 
GGCGGCGCTG AGGCTCAAGG GGGTGGCCAT GGCGACGATA CTGGTGGCCG 
GGGTGGTCGG GGTGGGTTTG CCGCTGGCGG GGCGGAAGCG GCGCGCGCTG 
CGCACGGACA GCGCCGCGTT CGTGGCGGCG AAGGCGTTCG CCGCGGGCGT 
CATCCTCGCC ACGGGGTTCG TCCACATGCT GCACGACGCC GAGCACGCGC 
TGTCCAGCCC CTGCCTCCCC GCGCACCCGT GGCGGAGCTT CCCTTTCCCG 
GGGTTCGTCG CCATGTCCGC CGCGCTCGCC ACGCTCGTGC TCGACTTCCT 
CGCCACCAGG TTCTACGAGG GCAAGCACAG GGCCGAGACG GAACGCGTCA 
AGGCCGCCGC CGCCGCCGCG CTCGCCGCCT CCTCGGCTAG CGACGATGAC 
ATCACCGTGG TCACCGTCAC CGAGGACGAC AACGACAACA AGGCGCCGCT 
GCTGCAACCT CACTCGCACT CACACAGCCA CCCCCATGGG CATGGGCATG 
GCCACGAGTT GGCGCAACCG GAGGGCAGTG GCGGTGAGGG GGAGGTGCCG 
GCGCAAGTGC GGTCCGTCGT GGTGTCGCAG ATACTTGAGA TGGGGATCGT 
GTCGCACTCG GTGATCATCG GATTGTCGCT CGGGGTGTCA CGGAGCCCCT 
GCACGATCAG GCCGTTGGTG GCGGCGCTCT CGTTCCACCA GTTCTTTGAG 
GGGTTCGCGC TTGGCGGATG CATTGCTCAG GCACAATTCA AGACACTATC 
AGCAGCTATA ATGGCATGTT TCTTCGCCAT CACAACACCA GCTGGGATCG 
CAGCTGGTGC CGGTGTGGCG TCATTCTACA ACGCCAATAG CCCACGGGCT 
CTAGTGGTGG AGGGCATCCT CGACTCCGTG TCGGCCGGCA TCCTAATATA 
CATGTCGCTG GTTGATCTCA TCGCCGCGGA CTTCCTTGGC GGGAAAATGA 
CAGGATCGAC ACGGCAGCAG GTGATGGCAT ACATTGCACT GTTCCTCGGC 
GCTCTCTCCA TGTCATCCCT TGCAATCTGG GCCTGAAAAC CAGAGGCCAT 
GGGTTTGAAG ATAGTTGCAC AACAACGCAT ACAGAGTAGT AGTAGCAGCT 
TTTGGCTCAT ATCACAACAA CATGCCCTGT TTTTCATGGG CGTGAGACTA 
ATCTGGCGCT GATAGAAAAC CGGGGCATTG TAATGTACAC ATATGTATAG 
CTTTTGCTTG TAGCTCCTAC TACTGCCCCC AAGCTCCCAA CCATATGATC 
ACCACAGCAA GTGTTGCTAA TGTGACTTAT GTGAGGTGGT GATGGCTGGA 
GAGTGTTGTT GGCTGAGTAT ATATATTTTT TTGTTCTTTC CTTTTTCTAA 
TGAAAGGTGT TTATCTTTTT TAAATGAATT GGCACCAGCA GCATCTCTGC 
ATCTGCTGCT ATTGTCCATA ACAACAGTTC GATTGGTGTG ATCATGTGAT 
GTATACTCCC TCTGTTAACA TAAGGGTTTA AATTTGTACG TAATATAGAG 
ATTCCTATGT GAT

Gene models with high sequence identity

AT1G10970.1 [+] show detail - zinc transporter 4 precursor
E-value: 2e-80; Score: 297.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Zinc/iron permease, fungal/plant	3.6e-168
HMMPfam	Zinc/iron permease	2.6e-62
HMMPanther	ZINC/IRON TRANSPORTER, PLANT AND YEAST	1e-136
HMMPanther	ZINC/IRON TRANSPORTER	1e-136

See the detailed result >

AT1G10970.1

Model type: Protein coding
Short Description: zinc transporter 4 precursor
Curator Summary: A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.
Computational Description: zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).
Link: InterPro Scan - TAIR