K27634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27634

Determination of introduced cDNA(s)

  • J033052L01 - Rice Full-length cDNAs - Original: J033052L01

    full reading [+] show sequence

    Nucleotide sequence: J033052L01 - full reading 
    GGTATCCAAA CTCTCCTTTA CCCCAATCTC GTGAGCGGCG ACGAACTTTG 
    CCACCGATTT CGATCCTTTT TTTTGGCAGC GTGTAGTGAC GCGAGAGAGA 
    AATGGCGAGC AAGAGGAGCG TGGGCACCCT GACGGAGTCG GATCTGAAGG 
    GGAAGAAGGT GTTCCTCCGC GCCGATCTGA ACGTGCCGCT GGATGACAGC 
    CAGAAGATCA CCGACGACAC CCGCATCCGC GCGTCGGTTC CCACCATCAA 
    GTTCTTGATG GGGAAGGGCG CCAAGGTCAT CCTGGCCAGC CATCTGGGTC 
    GCCCAAAAGG TGTAACCCCG AAGTACAGCT TGAAGCCTCT TGTTCCGCGC 
    TTGTCTGAGC TTCTTGGTGT TGATGTTGTG ATGGCCAATG ACTGCATCGG 
    TGAGGAAGTC CAGAAATTGG CTGCCACTTT ACCAGATGGT GGTGTTCTGC 
    TTCTAGAAAA TGTTCGGTTC TACAAGGAGG AAGAGAAAAA TGACCCTGAA 
    TTCGCCAATA AGCTGGCATC TGTTGCTGAC CTTTATGTAA ATGATGCCTT 
    TGGCACAGCA CACAGAGCTC ATGCTTCAAC AGAGGGAGTT ACGAAGTATT 
    TGAGACCTTC TGTTGCTGGT TTCCTCATGC AGAAGGAACT TGACTATCTT 
    GTTGGAGCTG TTGCCAACCC CAAAAAACCA TTTGCTGCCA TTGTTGGTGG 
    ATCCAAGGTG TCAACAAAGA TTGGGGTGAT TGAGAGTCTT TTGGCAAAGG 
    TTGACATCCT CATACTGGGT GGTGGTATGA TCTATACATT TTACAAGGCT 
    CAGGGATACG CTGTTGGAAA ATCTCTTGTG GAGGAAGACA AGCTCGAATT 
    GGCTACCTCG CTTATTGAAA AAGCCAAGTC AAAGGGAGTC TCCCTATTGC 
    TTCCAACTGA TATTGTAGTA GCTGATAAGT TTGCTGCGGA TGCAGAGAGC 
    AAGACTGTTC CAGCATCTGC TATCCCTGAT GGTTGGATGG GCCTTGATAT 
    TGGCCCAGAC TCCATCAAGA CTTTCAGTGA AACTTTGGAT ACTACCAAGA 
    CTGTCATCTG GAATGGGCCT ATGGGAGTGT TCGAGTTTGA GAAATTCGCT 
    GCTGGCACTG ATGCAATTGC CAAGAAATTG GCTGATATCA CCGCCAAAGG 
    TGTTACAACG ATCATTGGAG GTGGCGATTC TGTTGCTGCT GTCGAGAAGG 
    CCGGGTTGGC GGACAAGATG AGCCACATTT CAACGGGAGG TGGCGCGAGC 
    TTGGAACTGT TGGAAGGCAA GACCCTCCCA GGAGTCCTTG CTCTTAATGA 
    CGCATAAGAC TGGTGGCAAG CATATGACGC AATTTCCCTA GCCTTTTGCG 
    GTGGTCTTGT TCGGACCTTG GTGTAAGTTT GTAAGAATGC AAAGTCAGTC 
    GTCTGCTACC TTTGAACTTG AAATAGGCTT CGCTTCAGGT ATTGCTAGAT 
    GACAGTGAAT AATAATAAGC TTTTGGCGTC CTCGGCATGA GAGAAATGCC 
    CGGCACAAAC AAACTATAAT GGTGTACTAT ATTTTGCCAT ATTCTAGTTG 
    CAGCAGTTTA CACTAAGCT

    Gene models with high sequence identity

    1. AT1G79550.2 [+] show detail - phosphoglycerate kinase
      E-value: 0; Score: 681.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    FPrintScan Phosphoglycerate kinase 7.4e-98
    HAMAP Phosphoglycerate kinase 42.441
    superfamily Phosphoglycerate kinase 1.2e-163
    Gene3D Phosphoglycerate kinase, N-terminal 1.4e-65
    Gene3D Phosphoglycerate kinase, C-terminal 3.5e-81
    PatternScan Phosphoglycerate kinase, conserved site 0
    HMMPfam Phosphoglycerate kinase 1e-164
    HMMPanther Phosphoglycerate kinase 3.5e-259

    See the detailed result >

    AT1G79550.2

    Model type
    Protein coding
    Short Description
    phosphoglycerate kinase
    Curator Summary
    Encodes cytosolic phosphoglycerate kinase (PGK).
    Computational Description
    phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR